PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002565G0140
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 630aa    MW: 69197.9 Da    PI: 9.5512
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002565G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33.2e-12474518347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  q+G+g+W++I+r +   Rt+ q+ s+ qky
  PH01002565G0140 474 PWTEEEHRLFLLGLDQFGKGDWRSISRNFVISRTPTQVASHAQKY 518
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM006144.8E-13108165IPR003656Zinc finger, BED-type
PROSITE profilePS5080811.427108169IPR003656Zinc finger, BED-type
SuperFamilySSF576677.02E-6111165No hitNo description
PfamPF028922.3E-4114161IPR003656Zinc finger, BED-type
PROSITE profilePS5129416.527467523IPR017930Myb domain
SuperFamilySSF466891.5E-16469524IPR009057Homeodomain-like
SMARTSM007173.5E-10471521IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.8E-16471521IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.1E-10472517IPR009057Homeodomain-like
PfamPF002493.2E-10474518IPR001005SANT/Myb domain
CDDcd001678.54E-9474519No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MTGASLTHKE RSRVGSSSFS QTRLRFTSSF FFLFRQSSEY VNWEDDEGLP SDEEGGQGHV  60
SVDSSNSNDD EQAAVALTED GTTTVSQGRS KRGAKRQKRS LKETGREKQR SDCWKIFKVV  120
TIPSKTKKGE IDTRAKCRFC YKLMSYKQGG ATSHLMRHIP KCTPYQNKVA KMKAQANLNF  180
GPAMAGDTSL PLIATPREYD QDETRRIIAK MIIVHEYPFR MVEHIWFNAL MRYLNSSYQS  240
IDRKTIRSEC IKIYDSERDV LRKSLKTMGT SSSLSSVSSQ FQSFLRSTST KPSKSGLLIY  300
LDEGNESLDN KGLKLLEWWN LNTHIFPEKD AEGDVETILF PQKHRGEQLL PDDLSGDDHG  360
GVDQGGGQGV RERARGCRSA EVWFVALAAS VPARSADEVR RHYEALVEDV GAIEAGRVPL  420
PRYAGEESAA PPDGAAAAPK DGGGGHRREE RKGAGLDVGK SSSKAEQERR KGIPWTEEEH  480
RLFLLGLDQF GKGDWRSISR NFVISRTPTQ VASHAQKYFI RLNSMNRDRR RSSIHDITSV  540
TAGELAAQQD PITGHATGSP ATALGPGAMK HPGAGPPPMP GVGMYGAPMG HPVPGHMVSA  600
AVGTPVMFPP GHAPYVVPVG YPAPPAKMH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002565G0140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0914930.0FP091493.1 Phyllostachys edulis cDNA clone: bphyem204f04, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94663041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-57MYB family protein