PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002584G0160
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 389aa    MW: 42523.6 Da    PI: 7.9971
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002584G0160genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09207254455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  PH01002584G0160 207 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 254
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-16201268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.51E-10201258No hitNo description
PROSITE profilePS5088815.301203253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-16203266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6207254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-10209259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEGRAGAGGS DYIASLLNSS PRLDFGVLGG MPVLDGAVAA GAGGDCLEKF CGDPGFVERA  60
ARLSSFNGQR FAGAAGLFGM PPRRKQWRVR RGRRRLAGGV LRVRPCLGDE GRQCQEEEGA  120
GGQRQRQGAF LEHLLPGEQK ESDAKRCKTE EGEKKESPVK PKAEQARSDS SVEDGGQKQG  180
KGKNAKPVEP PKDYVHVRAR RGQATDSHSL AERVRRERIS QRMKVLQDLV PGCNKVIGKA  240
LMLDEIINYV QSLQRQVEFL SMKLATVNPL DFSNLPTLLH KDMYQACGPS ASSVFSLESS  300
NSVFPFSDQG DVFQSFVPNS MENQCTLNQL DLALSQATNA QYTFQDGTAS TNLQQQRNYW  360
EDDLQSVFHI DNGPNQENGV SAQSFHGW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18294RRKQWRVRRGRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002584G0160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0720410.0AK072041.1 Oryza sativa Japonica Group cDNA clone:J013105J01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755590.10.0transcription factor bHLH78 isoform X2
TrEMBLI1I8S70.0I1I8S7_BRADI; Uncharacterized protein
STRINGBRADI3G40860.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-51bHLH family protein