PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002604G0290
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 227aa    MW: 23258.2 Da    PI: 9.787
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002604G0290genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.42.8e-213182156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     ++y+GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++aa+++++g+
  PH01002604G0290 31 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDAAAREYRGA 82
                     68********.**********83...36**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.58E-183189No hitNo description
PfamPF008471.1E-143181IPR001471AP2/ERF domain
PROSITE profilePS5103224.2893289IPR001471AP2/ERF domain
SMARTSM003802.3E-363295IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-233290IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-323289IPR001471AP2/ERF domain
PRINTSPR003671.4E-113344IPR001471AP2/ERF domain
PRINTSPR003671.4E-115571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAPRTSEKTM PPAAAGATGL ALGVGGGAGG PHYRGVRKRP WGRYAAEIRD PAKKSRVWLG  60
TFDTAEEAAR AYDAAAREYR GAKAKTNFPF PVLPTAAAAT GGSRSSNSST VESFGGDVQA  120
PMQAMPLPPS LELDLFHRAA AAGAGAGGVR FPFNSYPVTH PYYFFGQASA AAGCHMLKLA  180
APVTVAAVAQ SDSDSSSVVN LAPSPPAVSA KKAPFDLDLN SLPPAEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-232892166ATERF1
3gcc_A2e-232892166ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002604G0290
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0922670.0FP092267.1 Phyllostachys edulis cDNA clone: bphylf055d07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146973.13e-90uncharacterized LOC100280582
TrEMBLA0A0A9U7H81e-104A0A0A9U7H8_ARUDO; Uncharacterized protein
STRINGGRMZM2G174347_P011e-89(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.15e-21erf domain protein 9