PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002606G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 982aa    MW: 106628 Da    PI: 6.4403
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002606G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.61.9e-336257152101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++++sw   gnsfvv+d + fa+ +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+kell+
  PH01002606G0040 625 FLNKTYDVVDDSSTDTVVSWGVAGNSFVVWDASAFATVLLPRYFKHSNFSSFVRQLNTYGFRKVDLDR---------WEFANEGFLRGQKELLK 709
                      9****************************************************************999.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +ikr++
  PH01002606G0040 710 TIKRRR 715
                      ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF537569.81E-9116403No hitNo description
Gene3DG3DSA:3.40.50.20003.6E-9284401No hitNo description
PfamPF002011.5E-20285401IPR002213UDP-glucuronosyl/UDP-glucosyltransferase
PROSITE patternPS003750350393IPR002213UDP-glucuronosyl/UDP-glucosyltransferase
SuperFamilySSF467857.62E-32621714IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.7E-58621714IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.9E-36621714IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-17625648IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-29625714IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-17663675IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340664688IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-17676688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016758Molecular Functiontransferase activity, transferring hexosyl groups
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 982 aa     Download sequence    Send to blast
MAADAGAGAG AGEGGRRLRV FFLPFFARGH LIPMTDLACL MAAARPDGVE ATMMVTPANA  60
ALIATTVTRA AAAGHTVNLM CYPFPDVGME RGVESLGVAA AHDAWRVYRA VDLSQPIHES  120
LLLQHRPDAI VADVPFWWVT DIAAELGVPR ITFNPVGVFP QLTMNNLVTI RSDIVRGGPA  180
APAVSVPGLP GKEITIPASE LPDFLVQDDH LSMSWDRIKA SQLAGFGVVV NTFADLEQPY  240
CDEFSRVDAR RAYFVGPVSL PSRSAVHRGG DANVDCLRWL STQSIRSAVY VCFGSWAYFS  300
EHQVRELALG LEASNQPFLW VLRSEDSNGR WAPEGWEQRV AGRGMVVRGW VPQLAVLAHP  360
SVGAFVTHCG WNSVLEAASA GVPVLTWPLV FEQFINERLV TEPHRPCSVT SHARTHHGDH  420
AAKLTSSSQW PPSLSRKGVG AIGGGGGGGN KISGEMDRDV DVSCVGGWTL PELSPWAFRN  480
VRRQLAPIKI SSWGGGRELR MAPILPEPPG NFGAGGGYVR GALAPIKISS WDSGREGGSS  540
GWLQSFQNRL ETSEPGVVVL CSSCSVARLH LLVGLIMDPF RGIVKEEFDF AGAAADGSPS  600
SWAGGAVAEL PRPMEGLGEA GPPPFLNKTY DVVDDSSTDT VVSWGVAGNS FVVWDASAFA  660
TVLLPRYFKH SNFSSFVRQL NTYGFRKVDL DRWEFANEGF LRGQKELLKT IKRRRPPSSP  720
SAQQSQSAAA CLEVGQFGSE GQVHRLQRDK GILIEEVVKL RQEQQTTRAQ MQAMEERISA  780
AEQKQQRMTV FLARAMKNPG FLQMLMDRQG QGRRRELEDA LSKKRRRPIE YLLPRDGEIS  840
PGESAVGDYV PGLGVDGVAD ADGDESRRGG GEDTESFWAE LLILGLEEKQ REEAEEGSGT  900
DVDDDVDVLV QSIYHLSPSA SSPSPRLRKL PKETKWIRAD GVGPRSPPHQ IFFWGLAGKA  960
VVECSRSRSV TKLLEREAYT S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2acv_A6e-35122402110392triterpene UDP-glucosyl transferase UGT71G1
2acv_B6e-35122402110392triterpene UDP-glucosyl transferase UGT71G1
2acw_A6e-35122402110392triterpene UDP-glucosyl transferase UGT71G1
2acw_B6e-35122402110392triterpene UDP-glucosyl transferase UGT71G1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1707713LKTIKRR
2812826RRRELEDALSKKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002606G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0925580.0AC092558.4 Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-72heat shock transcription factor A2