PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01002623G0240

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 404aa MW: 42797.3 Da PI: 6.1013

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01002623G0240	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.3e-05	309	347	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq PH01002623G0240 309 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 347 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.309	297	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-10	307	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.26E-5	307	351	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.9E-8	307	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MMASSSSSNL SDHLLQDDLP WPSLPFAPTL HHTIGANHQW SQPLMLNCSD HFTSDELEVL 60 LTAQGHHHSQ SAAPSPTPPQ LSSVLMMQEL EFQWSNCAVA DASMAMLISQ QNSHTIKAEE 120 ELPAESLDNP RPSCGTTIAY NDTVDGAGLP LAALDGAVLP SVNVSRLQKP CPAAAPLPGD 180 AFEILASASL CKALLSQAST VLHNGMPLLT EHHVPYGPPA RLQGPSIDNY KVSQSSRATG 240 VQDILVGLDP TLALIQSKMG VPPVSGNNAA EVRGGGHGSA EHKLSVPSSS KKHRLESRSS 300 TIVPSFKVRK EKLGDRIAAL QQLVSPFGKT DTASVLMEAI GYIKFLQDQV EGPSANGGEN 360 REEAAANKLD LRSRGLCLVP LSCTSYVTNE NGVWAPPPNF RGN*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MMASSSSSNL SDHLLQDDLP WPSLPFAPTL HHTIGANHQW SQPLMLNCSD HFTSDELEVL  60
LTAQGHHHSQ SAAPSPTPPQ LSSVLMMQEL EFQWSNCAVA DASMAMLISQ QNSHTIKAEE  120
ELPAESLDNP RPSCGTTIAY NDTVDGAGLP LAALDGAVLP SVNVSRLQKP CPAAAPLPGD  180
AFEILASASL CKALLSQAST VLHNGMPLLT EHHVPYGPPA RLQGPSIDNY KVSQSSRATG  240
VQDILVGLDP TLALIQSKMG VPPVSGNNAA EVRGGGHGSA EHKLSVPSSS KKHRLESRSS  300
TIVPSFKVRK EKLGDRIAAL QQLVSPFGKT DTASVLMEAI GYIKFLQDQV EGPSANGGEN  360
REEAAANKLD LRSRGLCLVP LSCTSYVTNE NGVWAPPPNF RGN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01002623G0240

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967935.1	1e-131	transcription factor bHLH123 isoform X2
TrEMBL	A0A3L6STE6	1e-141	A0A3L6STE6_PANMI; Uncharacterized protein
STRING	Pavir.Eb01016.1.p	1e-131	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7240	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-33	bHLH family protein