PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002648G0300
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 177aa    MW: 19193.7 Da    PI: 11.5892
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002648G0300genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-202473255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae+Aa+a++aa+++++g
  PH01002648G0300 24 RYRGVRRRP-WGKWAAEIRDPQ----KaARVWLGTFATAEDAARAYDAAALRFRG 73
                     7********.**********93....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-142473IPR001471AP2/ERF domain
PROSITE profilePS5103225.9232481IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-332483IPR001471AP2/ERF domain
SMARTSM003803.0E-372487IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-232482IPR016177DNA-binding domain
PRINTSPR003678.0E-122536IPR001471AP2/ERF domain
CDDcd000185.88E-143282No hitNo description
PRINTSPR003678.0E-124763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MMPSTWTQET EQGLVTAVAS PRRRYRGVRR RPWGKWAAEI RDPQKAARVW LGTFATAEDA  60
ARAYDAAALR FRGSRAKLNF PEEASSLAAA RLRRQPGEDH MGRLPCPERA HRRGANGTTD  120
RFVGNVNGRF LRSWTIGPSP PPPMCSVALA AARPAPPLFC GSGTHGSNGT EKGGED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-242386468ATERF1
3gcc_A6e-242386468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002648G0300
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126106e-71CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821609.16e-53ethylene-responsive transcription factor ERF095-like
TrEMBLA0A2T7F7G89e-51A0A2T7F7G8_9POAL; Uncharacterized protein
STRINGPavir.J16062.1.p4e-42(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150381120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.14e-18ERF family protein