PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002649G0270
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 362aa    MW: 38571.5 Da    PI: 8.7665
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002649G0270genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.2e-13108152347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
  PH01002649G0270 108 PWTEEEHRMFLMGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 152
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565319IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.024101157IPR017930Myb domain
SuperFamilySSF466899.72E-17102157IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-19104156IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.8E-12105151IPR009057Homeodomain-like
SMARTSM007172.6E-11105155IPR001005SANT/Myb domain
PfamPF002491.1E-10108152IPR001005SANT/Myb domain
CDDcd001674.69E-9108153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNARTCPI RGGGGGGGGV RLFGVRLTSP PEVAMKKSAS MSCIASSLGG  60
GSGGSSPAAG GGDGVRGGGE GGEGYVSDDP AHASCSTNGH AERKKGTPWT EEEHRMFLMG  120
LQKLGKGDWR GISRNFVVSR TPTQVASHAQ KYFIRQTNSS RRKRRLSLFD MVPEMPMDKS  180
SVVADQPMLC STQDEASCSN QLPILHFGQQ KEAEFAKQLP TLQLRQHDES EFAGHSLPAP  240
NLEMNPAVSF KATTVPTVQT FYPALIPVPL TLWPPNVANM EEAGTTHQII KPTPVNGKEV  300
IRADEIVSMS RLCIGEGSSG SMEPSALSRQ LTGSTNTRQS AFHVNPSIAR SDLSLDPKFV  360
I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002649G0270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189174.11e-177transcription factor MYB1R1-like
TrEMBLA0A3B6EBQ40.0A0A3B6EBQ4_WHEAT; Uncharacterized protein
STRINGMLOC_76271.31e-174(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-75MYB_related family protein