PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002652G0230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family AP2
Protein Properties Length: 226aa    MW: 25209 Da    PI: 10.0238
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002652G0230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.53.3e-1354110155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s ++GV++++++gr++A+++d  s+n  ++k+   g ++ +e Aa+a++ a++k++g
  PH01002652G0230  54 SVHRGVTRHRWTGRYEAHLWDkNSWNEsQNKKGKQGAYDDEEAAARAYDLAALKYWG 110
                      689******************8888888775555599******************98 PP
2AP230.31.1e-09153187138
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgt 38 
                      s+y+GV +++ +grW+A+I   +   g +k+ +lg+++ 
  PH01002652G0230 153 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYDD 187
                      89****99**********99966...3.6********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-1554120IPR016177DNA-binding domain
PfamPF008478.3E-955110IPR001471AP2/ERF domain
SMARTSM003801.6E-1955124IPR001471AP2/ERF domain
PROSITE profilePS5103218.63755118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1255120IPR001471AP2/ERF domain
PRINTSPR003673.3E-55667IPR001471AP2/ERF domain
PRINTSPR003673.3E-5100120IPR001471AP2/ERF domain
PfamPF008471.9E-5153186IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-6153187IPR016177DNA-binding domain
PROSITE profilePS510328.992154186IPR001471AP2/ERF domain
SMARTSM003800.037154208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-5154187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAKTRKNSTA ASNSNSGTGH GDAAVALAAA GAVRAKPKRT RKSVPRESPS QRSSVHRGVT  60
RHRWTGRYEA HLWDKNSWNE SQNKKGKQGA YDDEEAAARA YDLAALKYWG PDTILNFPLS  120
AYEEELKEME GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL  180
YLGTYDDSLL WAWMSSGLWM CDSGSAECEV LDLILTYAAT QGRWG*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002652G0230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116171e-168AK111617.1 Oryza sativa Japonica Group cDNA clone:J013102L16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696557.11e-104PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN45e-83AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLJ3MXL31e-103J3MXL3_ORYBR; Uncharacterized protein
STRINGOB09G17420.11e-104(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-78ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]