PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01002657G0020

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 157aa MW: 17002.4 Da PI: 9.6714

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01002657G0020	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.4	0.00014	45	84	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +R +++ +++ L++l+ + +K + a++L +A +I++L+ PH01002657G0020 45 KRNQKLGDKITALQQLVSPY-----GKTDTASVLHEAATCIRHLH 84 6788999********999.....9***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.842	34	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-9	45	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-6	45	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MTGDGSNFRG TKRTKKTATA TSEGPHHRLQ CSAKPINQPM KAPCKRNQKL GDKITALQQL 60 VSPYGKTDTA SVLHEAATCI RHLHEQIQIL TAPYPGISSS ASQQDTGDEE GVTDLRRRGL 120 CLAPLSPAIV NLVSETALLL QIYKARSYAY LSHTVY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01002657G0020

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792107.1	4e-64	uncharacterized protein LOC112873346
Swissprot	Q9SFZ3	3e-23	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A3L6TN37	8e-64	A0A3L6TN37_PANMI; Uncharacterized protein
STRING	Si039675m	6e-64	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3758	24	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	4e-25	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]