PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01002674G0130

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

C2H2

Protein Properties

Length: 493aa MW: 52906.6 Da PI: 8.4599

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01002674G0130	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	5.9e-06	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H PH01002674G0130 65 YVCEICNQGFQRDQNLQMHRRRH 87 9*********************9 PP
2	zf-C2H2	11.6	0.00083	144	165	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C C+k + +s++k H++t+ PH01002674G0130 144 ACARCSKAYAVHSDYKAHLKTC 165 6*******************98 PP
3	zf-C2H2	10.8	0.0016	173	191	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ PH01002674G0130 173 DCGRVFSRVESFIEHQDTC 191 9***************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.61E-5	62	88	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.0E-5	64	87	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.97	65	87	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	65	87	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	67	87	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	107	137	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	0.001	134	164	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	230	143	170	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MLGSCAPTAG PPPDEATPES FRSLQIAAAA GAATTKKKRR PAGTPDPDAE VVSLSPRTLL 60 ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKREAGE AARKRVFVCP EPTCLHHDPS 120 HALGDLVGIK KHFRRKHSGH RQWACARCSK AYAVHSDYKA HLKTCGTRGH SCDCGRVFSR 180 VESFIEHQDT CNAGRPQVAP ADVSLACGVA APASLQQQAP PAVSLSRTAS STSPSSDIVI 240 SPVAWPGAPA IPKPTAAAAF HRFDQVPSPR TPPSDYRGGG HNLELQLMPP SSGSAGAGAA 300 TGKAACYEAP HSPPAISQVN DAAMQLQLSI GFCGGDNRGE FRDHAAEPGG EFLAAACRAQ 360 EDAREQLQQA MAEKAAADEA RAQAKRQAEL AEQELASAKR MRHQAQVELS RAHALREHAV 420 RQVNATLLQI TCFSCRHKFR AARPPAAMSS EVACSYVSSV VTEGGDAEVD NIDEPLNVDG 480 LRRRQHARMD II*

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MLGSCAPTAG PPPDEATPES FRSLQIAAAA GAATTKKKRR PAGTPDPDAE VVSLSPRTLL  60
ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKREAGE AARKRVFVCP EPTCLHHDPS  120
HALGDLVGIK KHFRRKHSGH RQWACARCSK AYAVHSDYKA HLKTCGTRGH SCDCGRVFSR  180
VESFIEHQDT CNAGRPQVAP ADVSLACGVA APASLQQQAP PAVSLSRTAS STSPSSDIVI  240
SPVAWPGAPA IPKPTAAAAF HRFDQVPSPR TPPSDYRGGG HNLELQLMPP SSGSAGAGAA  300
TGKAACYEAP HSPPAISQVN DAAMQLQLSI GFCGGDNRGE FRDHAAEPGG EFLAAACRAQ  360
EDAREQLQQA MAEKAAADEA RAQAKRQAEL AEQELASAKR MRHQAQVELS RAHALREHAV  420
RQVNATLLQI TCFSCRHKFR AARPPAAMSS EVACSYVSSV VTEGGDAEVD NIDEPLNVDG  480
LRRRQHARMD II*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-17	139	193	3	57	Zinc finger protein JACKDAW
5b3h_F	5e-17	139	193	3	57	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	39	KKKRR
2	35	40	KKKRRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01002674G0130

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020171982.1	0.0	protein indeterminate-domain 16-like
Swissprot	Q9C9X7	1e-132	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	A0A3B6KJB2	0.0	A0A3B6KJB2_WHEAT; Uncharacterized protein
STRING	MLOC_57613.3	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1051	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	9e-98	indeterminate(ID)-domain 14

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]