PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002681G0110
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GATA
Protein Properties Length: 229aa    MW: 24040.8 Da    PI: 8.2055
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002681G0110genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA65.84.7e-21124158135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nCgtt+TplWR+gp+g+k+LCnaCG++++k+++
  PH01002681G0110 124 CANCGTTSTPLWRNGPRGPKSLCNACGIRFKKEER 158
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.167118154IPR000679Zinc finger, GATA-type
SMARTSM004012.3E-19118169IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.85E-14121158No hitNo description
Gene3DG3DSA:3.30.50.108.4E-18122158IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.34E-15123155No hitNo description
PROSITE patternPS003440124149IPR000679Zinc finger, GATA-type
PfamPF003201.2E-18124158IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MLHHYSGNDA CPAMASTFSL FFPQVEEACD DCNTITTSPS SRSPSSSSTG SVDCTLSLGT  60
PSSRRAAPEP KRRTPASYPS LSATVSWDPA AESYYCQQGK PTTAGASKGA VGSVGHYPLL  120
DRRCANCGTT STPLWRNGPR GPKSLCNACG IRFKKEERRA AAAAESGGAW CGYSAQHAHG  180
SAPKAPRAVS YAEEALPCGD VDAEAPFLAW RLNVVPPAPA RPTAFSVWP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000250|UniProtKB:Q6L5E5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002681G0110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0956960.0FP095696.1 Phyllostachys edulis cDNA clone: bphyst013i06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654834.17e-66PREDICTED: GATA transcription factor 19
SwissprotB8AX512e-53GAT15_ORYSI; GATA transcription factor 15
TrEMBLA0A0E0L6581e-64A0A0E0L658_ORYPU; Uncharacterized protein
STRINGOPUNC05G24550.12e-65(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.13e-20GATA transcription factor 19