PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002698G0190
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 561aa    MW: 63124.6 Da    PI: 7.7449
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002698G0190genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33.1e-12111151445
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      W ++E+ ll+++++++G g+W+ +a+++g +++  qc++++ 
  PH01002698G0190 111 WNADEEILLLEGIEMYGLGNWAEVAEHVG-TKSKAQCIDHYT 151
                      *****************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250244.0E-17637556IPR016827Transcriptional adaptor 2
SMARTSM002911.6E-104792IPR000433Zinc finger, ZZ-type
PfamPF005693.2E-94990IPR000433Zinc finger, ZZ-type
SuperFamilySSF578502.59E-1451114No hitNo description
CDDcd023354.01E-255199No hitNo description
PROSITE profilePS5013510.8245194IPR000433Zinc finger, ZZ-type
PROSITE patternPS0135705380IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.72E-12104157IPR009057Homeodomain-like
PROSITE profilePS5129322.48106158IPR017884SANT domain
SMARTSM007174.6E-11107156IPR001005SANT/Myb domain
PfamPF002494.5E-12110151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-8111153IPR009057Homeodomain-like
CDDcd001672.02E-11111152No hitNo description
SuperFamilySSF466892.51E-20457549IPR009057Homeodomain-like
PROSITE profilePS509349.201469560IPR007526SWIRM domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0016573Biological Processhistone acetylation
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MGRSRGVPNS GDDDTNHRSK RRRVASSGDA LDSLSAACGG AGEGGGKKAL YHCNYCNKDI  60
SGKIRIKCSK CPDFDLCVEC FSVGAEVTPH RSNHPYRVMD NLSFPLICPD WNADEEILLL  120
EGIEMYGLGN WAEVAEHVGT KSKAQCIDHY TTAYMNSPCY PLPDMSHVNG KNRKELLAMA  180
KVQGESKKGN SVLPGDLTPK DESPFSPSRV KYAFCSTNVC KHVCANKKAS SAGQFKDGAN  240
VAKVEDGHVD RSIGVKKPRY SADEGPSLTE LSGYNSKRHE FDPEYDNDAE QALAEMEFKE  300
TDSETDRELK LRVLRIYLSR LDERKRRKEF ILERNLLFPN PLEKDLTNED KEVYHRYKVF  360
MRFLSKEEHE ALVRSVIEER KIRRRIQELQ ECRSAGCCTL AEAKIHIEQK RKKEFEMNAQ  420
KAKESGQLIP NTKAVHKTNR PMKMESDGNL DPKKGLDSVG RDSPKTTVHT SVKQWDDWDI  480
VGLPGAELLS ASEKLLCCQN RLLPSHYLRM QEVLMQEIFK GSVVKKEDAH VLFKVDPAKI  540
DTVYDMVTKK LGNNEEAPTV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E4e-38511665120Transcriptional adapter 2
6cw3_G4e-38511665120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11923KRRRV
2323328RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002698G0190
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0669140.0AK066914.1 Oryza sativa Japonica Group cDNA clone:J013089I21, full insert sequence.
GenBankAK0725970.0AK072597.1 Oryza sativa Japonica Group cDNA clone:J023128E10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559501.10.0transcriptional adapter ADA2
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLI1GN910.0I1GN91_BRADI; Transcriptional adapter
STRINGBRADI1G08470.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77083847
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]