PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002711G0120
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 634aa    MW: 69587 Da    PI: 6.4699
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002711G0120genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.4e-32115171258
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                      dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+ver+++dp+++++tYeg H h
  PH01002711G0120 115 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERATDDPETLIVTYEGLHLH 171
                      8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.001109174IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-29110172IPR003657WRKY domain
SuperFamilySSF1182902.62E-26112172IPR003657WRKY domain
SMARTSM007742.9E-37114173IPR003657WRKY domain
PfamPF031061.0E-25115171IPR003657WRKY domain
SMARTSM0032096311349IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.7E-33319534IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.29E-36320531IPR017986WD40-repeat-containing domain
PROSITE profilePS5029419.196367539IPR017986WD40-repeat-containing domain
SMARTSM003205.4374411IPR001680WD40 repeat
SMARTSM003201.4E-7415454IPR001680WD40 repeat
PfamPF004002.1E-5419454IPR001680WD40 repeat
PROSITE profilePS5008213.583422463IPR001680WD40 repeat
SMARTSM003207.8E-8491530IPR001680WD40 repeat
PfamPF004003.6E-4494530IPR001680WD40 repeat
PROSITE profilePS5008214.218498531IPR001680WD40 repeat
PROSITE patternPS006780517531IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MEELDEWHDD FGEELMRELL DETAVAPSVD ADSEVVEGPR RRESMVNKLI STVYSGPTIS  60
DIESALSLTG GDQQLVDGRK YYNSSPVVFS PEKVMSKMEN KYTLKIKTCG NGLADDGYKW  120
RKYGQKSIKN SPNPRSYYRC TNPRCNAKKQ VERATDDPET LIVTYEGLHL HYTYSHFLHQ  180
QQHQGPPVSL PKKPRLHLQG PETYSPTSLL DGPSYMAQES PLVDAAATAA PTMMAAAATA  240
APTMMAAAAT AGGDHGSSNS NVVIDGFLFE HAVVPWSSSS YLDEAAAAGG GGNLLHGCFA  300
GEAADHEEHT TVTKLCDLGP RDSVCAVQWT REGSYLAIGT SLGDVQFTPT SSTIINNVYK  360
ESSLEHLEIW DSSRCKRIRN MGGHQTRAGV LAWSSCILSS GSRDKNILQH DIRVPSDYIS  420
KFSGHRSEIC GLKWSHDDRE LASGGNDNQL LVWNQRSQQP VCNLAWCKNV NELVSTHGYS  480
QNQIMVWKYP SMSKVATLTG HTLRVLYLAM SPDGQTIVTG AGDETLRFWN IFPSMKTQII  540
RWRSSVLSLE LCILLLYKQY ETAMAGLRAA GYQFDYDDYH RSCEPGGALP HPRTFKARAP  600
SGTPLSGSVD VFHGSCSVQN KAVHVDAAVT GRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ui9_R1e-66312549219488FIZZY-RELATED PROTEIN HOMOLOG
5l9t_R1e-66312549219488Fizzy-related protein homolog
5l9u_R1e-66312549219488Fizzy-related protein homolog
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002711G0120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0332401e-102BT033240.1 Zea mays full-length cDNA clone ZM_BFb0071M13 mRNA, complete cds.
GenBankBT0624331e-102BT062433.1 Zea mays full-length cDNA clone ZM_BFb0296J15 mRNA, complete cds.
GenBankKJ7275731e-102KJ727573.1 Zea mays clone pUT5433 WRKY transcription factor (WRKY120) mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-44WRKY DNA-binding protein 49