PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002725G0230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 431aa    MW: 44911.7 Da    PI: 8.2507
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002725G0230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.2e-053203571254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +++eYIk L
  PH01002725G0230 320 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 357
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.992308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-5318361No hitNo description
SuperFamilySSF474591.96E-11318375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-9318375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MADHQEMIHA AAAPAMYSGA TTSRTTQASH GGDWWSTAVA PPVSSCSPEM PGFGAWSAAA  60
AAGGHVDVVD GNRSRSSNTA SSESPGSNSL ATGSSITFQE PTGVADPATI AVPQTVAAGF  120
ATGWNQSFLD GSGFHGYMSS RSYQNHINTP SLTSPSSSNN NLMLQDSHDQ NYQFLSNLGF  180
ELLSSPTSPY GGSRSSLLRS LTEPAASAAA KPNSPGFQEF QQTMNQAQAA SIRQPLQFTN  240
NTPFWNPSTG FATVADGAGL GAAGTPPVQT RPAKLAAKSA LEGVGDSSSV ITKKANADPT  300
PLKKARSTGT PSPLPTFKVR KEKLGDRITA LQQLVSPFGK TDTASVLHET IEYIKFLHEQ  360
VGALSAPYLK NRQQVPHSKS STDKSKDGGE AAAKRDLTGR GLCLVPISST FAVASETPVD  420
FWTPFGAVFR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002725G0230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3643037e-51AK364303.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023J11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821266.10.0transcription factor bHLH112-like isoform X1
TrEMBLA0A3L6PM300.0A0A3L6PM30_PANMI; Uncharacterized protein
STRINGPavir.Fb00501.1.p1e-179(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-44bHLH family protein