PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002726G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CAMTA
Protein Properties Length: 951aa    MW: 105893 Da    PI: 5.7002
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002726G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1181.59.4e-57211372118
             CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      l+ ++rwl+++ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLKvg+v+vl+cyYah+een++fq
  PH01002726G0060  21 LEAQNRWLRPTEICQILSNYKKFSIAPEPPNRPSSGSLFLFDRKILRYFRKDGHNWRKKKDGKTIKEAHEKLKVGSVDVLHCYYAHGEENENFQ 114
                      5679****************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+ywlLee + +ivlvhylevk
  PH01002726G0060 115 RRTYWLLEEGFMNIVLVHYLEVK 137
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.916142IPR005559CG-1 DNA-binding domain
SMARTSM010766.3E-7719137IPR005559CG-1 DNA-binding domain
PfamPF038591.8E-5022136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.5E-7470559IPR013783Immunoglobulin-like fold
PfamPF018331.6E-7471544IPR002909IPT domain
SuperFamilySSF812964.98E-17471557IPR014756Immunoglobulin E-set
CDDcd002044.93E-11578658No hitNo description
SuperFamilySSF484037.17E-12583660IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.257583660IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.7E-12584661IPR020683Ankyrin repeat-containing domain
PfamPF127963.0E-6585661IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.19599631IPR002110Ankyrin repeat
SMARTSM002480.14599631IPR002110Ankyrin repeat
SMARTSM00248290638667IPR002110Ankyrin repeat
SuperFamilySSF525408.5E-8772824IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.094773795IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.828774803IPR000048IQ motif, EF-hand binding site
PfamPF006120.0051775794IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0069796818IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.395797821IPR000048IQ motif, EF-hand binding site
PfamPF006122.1E-4799818IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 951 aa     Download sequence    Send to blast
MAEIHKYGLS NQPPDIPQIL LEAQNRWLRP TEICQILSNY KKFSIAPEPP NRPSSGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTIKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEEGFMNIVL VHYLEVKGGK QSFSCAKEAE EIERLSNADS PACSNSFASQ SQVASQTMDA  180
ESPISGQISE YEDAETDNCR ASSRYHPFVE MQQPVDGVMM DNLLGASAPN TSVNNLGKIS  240
ILHSEVLCKC WLLAHISFTT VAGYHGEMQP TTANLHNHFV THHDIASVFN EAGAGLRGGS  300
KSRLDSVQFG EPFPEYPIGF MEPTLYSSVA TMESNNLDDS SRLETFMSEA LYTNNLTQKE  360
ADALSAAGMT PSQVQNDSYT EGSIRYPLLK QSSLDLFKIE PDGLKKFDSF SRWMSSELPE  420
VVDLDIKSSS DAFWSSTETV NVADGSSMPI NEQLDAYVVS PSLSQDQLFS IIDVSPSWAT  480
GSKKTKVLIM GTFLANKEDV ENCKWSCMFG DVEVPTEVLA DGSLRCYTPV HQSGRVPFYV  540
TCSNRVACSE VREFEFRDPE SQYMETLDPH STGINEMHLH IRLEKLLSLG PDDYERDARG  600
WTALHWAASC GRERTVGALI ANGAASGALT DPTPQFPSGR TPADLASENG HKGIAGFLAE  660
SALTSHLSAL TLKESKGGNV EEICGLAAAE DFTESSSAQL ACQDSQAESL KDSLSAVRKS  720
TQAAARIFQA FRVESFHRKK VVEYGDDDCG LSDEHTLSLV SLRNAKPGQN DVPLHSAAVR  780
IQNKFRGWKG RKEFMIIRQK IVKLQAHVRG HQVRKNYRKI VWSVGIVEKV ILRWRRKGRG  840
LRGFQPEKQL EGPSQIQPAK DEDEYDFLKD GRKQAEGRLE RALARVKSMT QYPEAREQYH  900
RLQTCVTELQ ESKAIQDRQL SDAAGADGGD FMAELEDLCG NEDTPMSTIL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002726G0060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043410.0AP004341.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0524E08.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647012.10.0calmodulin-binding transcription activator 1 isoform X1
TrEMBLK3ZQB70.0K3ZQB7_SETIT; Uncharacterized protein
STRINGOMERI07G19500.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.21e-123Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains