PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002728G0290
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 658aa    MW: 73919.2 Da    PI: 8.5629
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002728G0290genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.7e-07600642343
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      +W++   + lv+a k ++++   +W+++a+ ++ g+t  qck +
  PH01002728G0290 600 AWSEAQVLALVQALKAFPKDasqRWERVAAAVP-GKTVVQCKKK 642
                      8********************************.********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.7E-2094197IPR001623DnaJ domain
SuperFamilySSF465651.7E-2095176IPR001623DnaJ domain
SMARTSM002716.9E-1597172IPR001623DnaJ domain
PROSITE profilePS5007618.0398180IPR001623DnaJ domain
CDDcd062575.63E-1398169IPR001623DnaJ domain
PfamPF002269.6E-1898177IPR001623DnaJ domain
PRINTSPR006252.0E-8103121IPR001623DnaJ domain
PRINTSPR006252.0E-8121136IPR001623DnaJ domain
PRINTSPR006252.0E-8152172IPR001623DnaJ domain
PROSITE patternPS006360157176IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.191466521IPR017877Myb-like domain
SuperFamilySSF466891.42E-7467514IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-4468513IPR009057Homeodomain-like
SMARTSM007174.4E-5470523IPR001005SANT/Myb domain
CDDcd001674.51E-4473513No hitNo description
PfamPF002491.6E-5473513IPR001005SANT/Myb domain
PROSITE profilePS500906.237593647IPR017877Myb-like domain
SMARTSM007178.4E-6597649IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-4598645IPR009057Homeodomain-like
SuperFamilySSF466899.72E-8599652IPR009057Homeodomain-like
PfamPF002491.1E-5600642IPR001005SANT/Myb domain
CDDcd001675.30E-5600642No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MDSQRSCLLI TYSPEIIDGA PLYVSSNCLP VKASKYEPAG HSFHAAALKI LGLEEQEDTE  60
TDDRSVSSDD KSQDFAAASD TFSSKGRKKS ASGSQQQDHY ALLGLGHLRF LATEDQIRKS  120
YREMALKHHP DKQAALILAE ASEEAKQAKK DEIESHFKAI QEAYEVLIDP TKRRIFDSTD  180
EFDDDIPTDC APQDFFKVFG PALMRNGRWS VSQPIPSLGD DTTPIDEVDK FYNFWYNFKS  240
WREFPHADEY DLEQAESREH KRWMERQNVK LQEKAKKIEY ARVRTLVENA YKKDPRIQRR  300
KEEEKAEKQR RKEAKYMAKK LQEEEAARAI EQERKRKEEE AKKAAEAALN QKKLKEKEKK  360
LLRKEKTRLR TLVAPVVTEN HFGLSEDDVE TACTSLHLVQ LKKLCDNMEG KDAAEKARLL  420
RGALDKEISS NTSKEEKKIQ ASGTEGSTPK STSIGEKVAQ GSALNSYEKK DRPWGKEEVE  480
MLRKAMQKYP KGTSRRWEVV SEYIGTGRSV EEILKATKTV LLQKPDSAKA FDCFLEKRKP  540
AQSIASPLST RDETVGLSNE GAGTASSKAA AEPASSQTDN AKTGADPVPN GAPSGTEQDA  600
WSEAQVLALV QALKAFPKDA SQRWERVAAA VPGKTVVQCK KKVATMRENF RSKKSAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A3e-1919429820124Zuotin
5dje_B3e-1919429820124Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333354RKRKEEEAKKAAEAALNQKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002728G0290
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319127.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_021319128.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_021319129.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_021319130.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A1B6PK990.0A0A1B6PK99_SORBI; Uncharacterized protein
STRINGPavir.Ia04593.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain