PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002733G0270
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 192aa    MW: 21113.8 Da    PI: 6.5451
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002733G0270genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44e-1951101256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      +y+G+r+++ +g+W+AeIrdp+    +  r++lg+f tae Aa a+++a+++++g+
  PH01002733G0270  51 QYRGIRRRP-WGKWAAEIRDPV----KgVRVWLGTFPTAEAAALAYDRAARRIRGA 101
                      6********.**********75....44*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.68E-2251109IPR016177DNA-binding domain
PROSITE profilePS5103224.31651108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-3251109IPR001471AP2/ERF domain
SMARTSM003801.4E-3651114IPR001471AP2/ERF domain
CDDcd000181.93E-2051110No hitNo description
PRINTSPR003675.2E-115263IPR001471AP2/ERF domain
PfamPF008472.2E-1252100IPR001471AP2/ERF domain
PRINTSPR003675.2E-117490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MCGGAIIQDY IPARRRVSAA DFWPDADDSD PHPHGPATEK APRAKRERKN QYRGIRRRPW  60
GKWAAEIRDP VKGVRVWLGT FPTAEAAALA YDRAARRIRG AKAKVNFPND VPRAASAVLP  120
PPKKEPESAA CSDEVKELSE ELMAYESYMN FLGIPYMEGG DAVAPTTAAE EAPAPAGLWS  180
FEDYYQPSLE L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2351111566ATERF1
3gcc_A4e-2351111566ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14458KRERKNQYRGIRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002733G0270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0957260.0FP095726.1 Phyllostachys edulis cDNA clone: bphylf030c12, full insert sequence.
GenBankFP0966640.0FP096664.1 Phyllostachys edulis cDNA clone: bphyem124m12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131773.19e-76uncharacterized protein LOC100193143
TrEMBLB4FDY92e-74B4FDY9_MAIZE; Ethylene-responsive transcription factor RAP2-2
TrEMBLK4JRM42e-74K4JRM4_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM2G169382_P014e-75(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.15e-34ERF family protein