PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002744G0230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 572aa    MW: 61038.8 Da    PI: 6.8462
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002744G0230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.7e-32221277259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK+vk se+prsYY+Ct+++Cp+kkkve+s  d++++ei+Y+g+Hnh 
  PH01002744G0230 221 DDGYNWRKYGQKQVKRSENPRSYYKCTFPNCPTKKKVETSL-DGQITEIVYKGTHNHA 277
                      8****************************************.***************7 PP
2WRKY105.82.2e-33388446159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d ++v++tYeg+Hnh+
  PH01002744G0230 388 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERASHDLRAVITTYEGKHNHD 446
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-27215279IPR003657WRKY domain
PROSITE profilePS5081121.712215279IPR003657WRKY domain
SuperFamilySSF1182902.22E-24216279IPR003657WRKY domain
SMARTSM007744.2E-34220278IPR003657WRKY domain
PfamPF031064.0E-24221276IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-37373448IPR003657WRKY domain
SuperFamilySSF1182901.96E-29380448IPR003657WRKY domain
PROSITE profilePS5081138.687383448IPR003657WRKY domain
SMARTSM007741.2E-38388447IPR003657WRKY domain
PfamPF031069.6E-26389446IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MTTSSSGSIE TSASSRPGSF SLASTSLTDF LGGSAAGGAA GGLSRYKAMT PPSLPLSPPL  60
VSPSSYFNMP TGLNPADFLE SPVLLTSSIF PSPTTGAFGS QLFNWRPEVA APSAEQGGKD  120
EPRQPYSDFS FQTAPVNNEE AARTTTFQPP IPPAPLGEEA YRGQQQQQQP WGYQQPAGMD  180
AGANPAGFGT APLQATSSEM VPHVAASGGY SLPHSQRRSS DDGYNWRKYG QKQVKRSENP  240
RSYYKCTFPN CPTKKKVETS LDGQITEIVY KGTHNHAKPQ NTRRGSGAGS VAAQVLQSGG  300
DASEHSFGGI SGTPVATPEN SSASFGEDEI GVSSSRAGNV GGDEFDDDEP DSKRWRKDGD  360
GEGISMAGNR TVREPRVVVQ TMSDIDILDD GYRWRKYGQK VVKGNPNPRS YYKCTTAGCP  420
VRKHVERASH DLRAVITTYE GKHNHDVPAA RGSAALYRPA PPADNAGSSS LHYLSNQHAM  480
AYQTSGSGLV DATGTQYTLR PDGFGTQGSS FDLSGAPVQA AGSSFGFSGF DNQMGSYMSQ  540
HQPQQRQNDA MHASRTKEEP REDMFFQRSL Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-36221449878Probable WRKY transcription factor 4
2lex_A5e-36221449878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002744G0230
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769250.0AY676925.1 Oryza sativa (indica cultivar-group) transcription factor WRKY24 (WRKY24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644934.10.0PREDICTED: probable WRKY transcription factor 33
SwissprotQ6B6R40.0WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLJ3L5E50.0J3L5E5_ORYBR; Uncharacterized protein
STRINGOB01G44510.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.13e-99WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]