PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002755G0230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family M-type_MADS
Protein Properties Length: 105aa    MW: 11303.1 Da    PI: 11.0338
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002755G0230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.32.4e-294392251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++g+lye++s
  PH01002755G0230 43 RIEDATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPRGRLYEFAS 92
                     8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.1E-363493IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.8573494IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-273694IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003690IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-293656IPR002100Transcription factor, MADS-box
PfamPF003196.3E-274390IPR002100Transcription factor, MADS-box
CDDcd002655.64E-324492No hitNo description
PRINTSPR004042.1E-295671IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-297192IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MVATAAAAAR GEGQQIVAAP TPADSTVKAV KKTGRRGRRE MRRIEDATSR QVTFSKRRSG  60
LLKKAFELSV LCDAEVALIV FSPRGRLYEF ASATEYVRGL ISVC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A6e-183693259Myocyte-specific enhancer factor 2A
3mu6_B6e-183693259Myocyte-specific enhancer factor 2A
3mu6_C6e-183693259Myocyte-specific enhancer factor 2A
3mu6_D6e-183693259Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002755G0230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0985091e-141FP098509.1 Phyllostachys edulis cDNA clone: bphylf003i12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026380236.13e-30MADS-box protein SOC1-like isoform X1
SwissprotA2Z9Q71e-30MAD56_ORYSI; MADS-box transcription factor 56
SwissprotP0C5B21e-30MAD56_ORYSJ; MADS-box transcription factor 56
TrEMBLA0A1E5VTG74e-36A0A1E5VTG7_9POAL; MADS-box protein SOC1
STRINGTraes_1BL_F1D5BF5F8.21e-31(Triticum aestivum)
STRINGTraes_6DS_2BAD7A60A.19e-32(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.16e-28AGAMOUS-like 14
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Bai Z, et al.
    The impact and origin of copy number variations in the Oryza species.
    BMC Genomics, 2016. 17: p. 261
    [PMID:27025496]
  4. Shibaya T, et al.
    Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of Flowering Time in Rice.
    Plant Cell Physiol., 2016. 57(9): p. 1828-38
    [PMID:27318280]
  5. Han Z,Zhang B,Zhao H,Ayaad M,Xing Y
    Genome-Wide Association Studies Reveal that Diverse Heading Date Genes Respond to Short and Long Day Lengths between Indica and Japonica Rice.
    Front Plant Sci, 2016. 7: p. 1270
    [PMID:27621738]