PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002779G0140
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 247aa    MW: 26191.8 Da    PI: 8.5419
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002779G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08169213554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  PH01002779G0140 169 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 213
                      99***********************7.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-15162223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-10162218No hitNo description
PROSITE profilePS5088815.77164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-14166224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-6169213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAGQQQPPGA EDDFLEHFFG IPSSFPSAGA AGAGGSHGAR ADHTFPLALS LDAAAEASGS  60
AKRLHDDPDG GKPVSSLPIF FVRAGRGCEL VGENWGLRPT EDRDPVQLAG LFAPVFASTG  120
GVQPPHFRPA PPPQVFHAQP KPGEGAMALQ PPAPRPKVRA RRGQATDPHS IAERLRRERI  180
AERMRALQEL VPNTNKTDRA AMLDEILDYV KFLRLQVKVL SMSRLGGADA VAQLVADVPL  240
SVKVTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173178RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002779G0140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960750.0FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804227.15e-96transcription factor UNE12
TrEMBLA0A2S3GW171e-94A0A2S3GW17_9POAL; Uncharacterized protein
STRINGPavir.J03221.1.p1e-93(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-28bHLH family protein