PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002800G0110
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 313aa    MW: 33753.6 Da    PI: 6.6446
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002800G0110genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY894e-28118178259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dDg++WrKYGqK++ g+++pr+YYrCt++   gCpv+k+v+r++edp v++++Y+geH+++
  PH01002800G0110 118 DDGHSWRKYGQKDILGAKHPRGYYRCTHRnsqGCPVTKQVQRTDEDPAVFDVVYHGEHTCR 178
                      8***************************98889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.837112175IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-29112178IPR003657WRKY domain
SuperFamilySSF1182901.07E-25115178IPR003657WRKY domain
SMARTSM007742.1E-40117179IPR003657WRKY domain
PfamPF031062.1E-27118178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEGVEGNYGG GSLQLVSELS RVQELVRQLE LHLHAPSSSV DLCRHLAAQI IALTDRSIGI  60
VAAHFPDTPT PPLSATPSPL SDVSDQPFRT NTKKRKATAK WTSQVRVNAA GRAEGPADDG  120
HSWRKYGQKD ILGAKHPRGY YRCTHRNSQG CPVTKQVQRT DEDPAVFDVV YHGEHTCRPA  180
SGAAKRPPQH QQHNPHAQSL LQSLSADLTV NTDSNLNATA ASPLTPENRS ARGVSPSLPS  240
PVASDSNGGL AMSRCPLMGY REWQTSDGDL QEVVSALAAV SAVPAPGVID AEFMPYYFDF  300
DPSFDIDAPS LFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-22118178969OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002800G0110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0994400.0FP099440.1 Phyllostachys edulis cDNA clone: bphylf030h09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187901.11e-127probable WRKY transcription factor 41
TrEMBLA0A1D5UYQ91e-126A0A1D5UYQ9_WHEAT; Uncharacterized protein
TrEMBLA7X9Y51e-126A7X9Y5_WHEAT; Transcription factor WRKY
STRINGEMT159141e-126(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.27e-30WRKY family protein