PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01002804G0220

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 221aa MW: 24503.9 Da PI: 5.91

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01002804G0220	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.9	3.8e-13	51	97	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ e+ErrRR r+N+ + Lr ++Pk +K+sK ++L A+++Ik+Lq PH01002804G0220 51 KNLEAERRRRGRLNNNILALRAVVPKI-----TKMSKESTLSDAIDHIKKLQ 97 56799*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.665	47	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.16E-15	49	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-13	49	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-10	50	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-13	53	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MPRRPRARSG EEVKVEDFVE SVLNFGGGGE ESGGGQEPVA AVEVTTVYKS KNLEAERRRR 60 GRLNNNILAL RAVVPKITKM SKESTLSDAI DHIKKLQNEV LELQRQLADS PGEAWEKQGS 120 ASCSESFVPT ENIHYQGQVE LIPLGSCRYN LKIFWTKKAG LFTKVLEALC SYNVQVLSLN 180 TITFYGYAES FFSIEVKGEQ DVVMMELRSL LSSIVEVPSI *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a crucial role in tapetum development. Required for male fertility and pollen differentiation within the developing anther. Plays a major role in maintaining tapetum development, starting in early meiosis. Required for pollen mother cell meiosis. May regulate the anther-specific cysteine protease CP1 and lipid-transfer proteins C4 and C6 (PubMed:16141453). Required for anther development. Functions in parallel with GAMYB to regulate early anther development. Functions upstream of the transcription factor TDR and may positively regulate its transcription (PubMed:20590996). {ECO:0000269\|PubMed:16141453, ECO:0000269\|PubMed:20590996}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01002804G0220

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK242516	0.0	AK242516.1 Oryza sativa Japonica Group cDNA, clone: J080312F02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020177646.1	1e-123	transcription factor UDT1-like
Swissprot	B9FXT3	1e-109	UDT1_ORYSJ; Transcription factor UDT1
TrEMBL	A0A3B6AVZ9	1e-122	A0A3B6AVZ9_WHEAT; Uncharacterized protein
TrEMBL	A0A446KV36	1e-122	A0A446KV36_TRITD; Uncharacterized protein
STRING	Traes_2AS_C0C74B775.1	1e-122	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11982	30	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	6e-13	bHLH family protein

Publications ? help Back to Top
Liu Z,Bao W,Liang W,Yin J,Zhang D Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development. J Integr Plant Biol, 2010. 52(7): p. 670-8 [PMID:20590996]