PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002807G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 513aa    MW: 54647.7 Da    PI: 8.9255
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002807G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-05110130323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C++Cgk F r  nL+ H r H
  PH01002807G0040 110 CEICGKGFQRDQNLQLHRRGH 130
                      *******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.56E-7107130No hitNo description
Gene3DG3DSA:3.30.160.604.5E-5107130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.076108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.489108130IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
SMARTSM00355130150180IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.56E-7180205No hitNo description
SMARTSM00355160185205IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MSNLTSSASA SASAGGPNPP PPPASNKRKR SLPGNPGRCY CMSSLPEFTS SRCSCMVRYS  60
RKNPTDGEHL VSFFVCPSPG WMENTRRSDP DAEVVALSPA TLMATNRFLC EICGKGFQRD  120
QNLQLHRRGH NLPWKLKQRG SKEAVRKKVY ICPEASCVHH DPSRALGDLT GIKKHFFRKH  180
GEKKWKCDKC SKKYAVHSDW KAHSKICGTR EYKCDCGTIF SRRDSFITHR AFCDALTEES  240
AKAIGGMPVM AAAAQGHHPL LFSPPPPTHQ VMPHHELAAL QDHHQEVMQP LQQHCNYAMK  300
PEMPPWPTMP YDHHHPLLQP LCNAAAAAQS SATSARPQQQ LPTAAAHLSA TALLQKAAQM  360
GATIGGAGTG GAGAHYTQMA GASAGAATSA ASSATFGLGL SCLNTQQDGN GLVPAGVMGL  420
ARTASHGRSG GGSAAGGGGD GMTRDFLGLR AFSHRDILGL AGFDSSCMGT VNATTNTSMS  480
CYEPQQHGQA QAHAQQQQQS SNEPWHGMGS HS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33181242364Zinc finger protein JACKDAW
5b3h_F1e-33181242364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134147KLKQRGSKEAVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002807G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0094530.0BT009453.1 Triticum aestivum clone wlmk8.pk0027.b6:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969529.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-111IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLK3XHB60.0K3XHB6_SETIT; Uncharacterized protein
STRINGSi001287m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.17e-88C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]