PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002828G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 349aa    MW: 39121.7 Da    PI: 7.2655
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002828G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS312.41e-952534860374
             GRAS  60 lykalppsetsekn.......sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiT 145
                        ++ + +++++++           +  +k++++++P+ kf+hltaNqaIlea+  ++++Hi+Df+i qG+QW+aLlqaLa+R+eg+p ++Ri 
  PH01002828G0080  25 QQQQQQHQHQQRHHhlppprqAPALTLCYKTLNDACPYSKFAHLTANQAILEATGAATKIHIVDFGIVQGIQWAALLQALATRSEGKPsRIRIS 118
                      2222222222111123333324444455599*****************************************************887769**** PP

             GRAS 146 gvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237
                      gv sp  g   + +l +t  rL++fA+ lgv+fef + + + +++l+ +++ v+p+Ea+aVn++lql++ll   ++++++ ++vL+l ksl+P 
  PH01002828G0080 119 GVPSPFLGpqPAASLAATSARLRDFAKLLGVDFEFVP-LLRPVHELDQSDFLVEPDEAVAVNFMLQLYHLL---GDSDEPVRRVLRLAKSLNPA 208
                      ****988888999************************.599******************************...66666777************ PP

             GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac.egaerrerhetlekWrerleeaGFkpvpls 330
                      vv++ e e+++n++ F++r+++al+yy ++f+sl++ ++r+s er+ vEr ++g++i+ +v   ega+r+ r+   ++W+  +e +GF+pv+ls
  PH01002828G0080 209 VVTLGEYEVSLNRAGFVDRIANALSYYRSVFESLDVAMARDSPERVRVERCIFGERIRRAVGPgEGADRTDRMAGSSEWQTLMEWCGFEPVRLS 302
                      *************************************************************8549999************************** PP

             GRAS 331 ekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                      ++a++qa+lll +++ +  y++ e + +++ l W++rpL++vSaWr
  PH01002828G0080 303 NYAMSQADLLLWNYDsKYKYSLVELQPAFLsLAWEKRPLFTVSAWR 348
                      ***************77789999****9999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.8061326IPR005202Transcription factor GRAS
PfamPF035143.5E-9325348IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIQ QQQQQQQQQQ HQHQQRHHHL PPPRQAPALT LCYKTLNDAC  60
PYSKFAHLTA NQAILEATGA ATKIHIVDFG IVQGIQWAAL LQALATRSEG KPSRIRISGV  120
PSPFLGPQPA ASLAATSARL RDFAKLLGVD FEFVPLLRPV HELDQSDFLV EPDEAVAVNF  180
MLQLYHLLGD SDEPVRRVLR LAKSLNPAVV TLGEYEVSLN RAGFVDRIAN ALSYYRSVFE  240
SLDVAMARDS PERVRVERCI FGERIRRAVG PGEGADRTDR MAGSSEWQTL MEWCGFEPVR  300
LSNYAMSQAD LLLWNYDSKY KYSLVELQPA FLSLAWEKRP LFTVSAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A0.04934876375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002828G0080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1469360.0AC146936.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone B1154F06 map near C10769, complete sequence.
GenBankAK0640220.0AK064022.1 Oryza sativa Japonica Group cDNA clone:001-125-A04, full insert sequence.
GenBankAK1016030.0AK101603.1 Oryza sativa Japonica Group cDNA clone:J033051K20, full insert sequence.
GenBankAK1028570.0AK102857.1 Oryza sativa Japonica Group cDNA clone:J033110P03, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560467.10.0SCARECROW-LIKE protein 7
SwissprotQ53K160.0SCL7_ORYSJ; SCARECROW-LIKE protein 7
TrEMBLI1GNV60.0I1GNV6_BRADI; Uncharacterized protein
STRINGBRADI1G10330.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-128GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
    Plant Cell, 2016. 28(5): p. 1025-34
    [PMID:27081181]