PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002830G0260
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GATA
Protein Properties Length: 127aa    MW: 13783.5 Da    PI: 10.2212
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002830G0260genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.81.7e-192155135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C+ C+tt+Tp+WR gp g+++LCnaCG++yrkk++
  PH01002830G0260 21 CVECRTTTTPMWRGGPTGPRSLCNACGIRYRKKRR 55
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.8611551IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-151566IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-141858No hitNo description
Gene3DG3DSA:3.30.50.104.3E-161956IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.03E-132056No hitNo description
PROSITE patternPS0034402146IPR000679Zinc finger, GATA-type
PfamPF003202.4E-172155IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MGSSDRKVDG IGVVEEGRRS CVECRTTTTP MWRGGPTGPR SLCNACGIRY RKKRRQELGQ  60
DQKQPQQHRG EATTEVKEGK DSNSSSSSSS SNLQVVQKRR LLMGVEEAAL LLMTLSSPHA  120
STLLHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002830G0260
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0967990.0FP096799.1 Phyllostachys edulis cDNA clone: bphylf042b12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567660.12e-59GATA transcription factor 23
TrEMBLA0A0D9V0K94e-59A0A0D9V0K9_9ORYZ; Uncharacterized protein
STRINGLPERR01G13070.27e-60(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-20GATA transcription factor 16