PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002850G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 477aa    MW: 54316.7 Da    PI: 9.379
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002850G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.34.4e-21119219198
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+l  sd++++g +++ ++++ee+       +++++ ++l+ +d++ ++W +++i+r++s+r++lt+ W+ Fv++++L +gD+++F   + +
  PH01002850G0020 119 FCKTLNASDMSTHGGFSVLRRHVEEClpslhmAQNPPC-QELVAKDLHANEWHFRHIFRGQSRRHLLTTAWSVFVSSKRLVAGDVFIFL--RGE 209
                      89*****************************8666666.59************************************************..348 PP

                      EE..EEEEE- CS
               B3  89 efelvvkvfr 98 
                      ++ l+v+v+r
  PH01002850G0020 210 NGDLRVGVRR 219
                      8889***998 PP
2Auxin_resp44.37.6e-16245288144
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmR 44 
                      a+ha+st++ F+++Y+Pr+++seF+v+v+k+++a ++k+ vG R
  PH01002850G0020 245 ASHAISTGTLFSIFYKPRTGRSEFIVSVNKYVEAKNHKMNVGVR 288
                      789***************************************99 PP
3Auxin_resp33.51.8e-122883211851
       Auxin_resp  18 rastseFvvkvekvekalkvkvsvGmRfkmafet 51 
                      r+++seF+v+v+k+++a ++k+ vG Rfkm+fe+
  PH01002850G0020 288 RTGRSEFIVSVNKYVEAKNHKMNVGVRFKMRFEG 321
                      7899****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.45E-40108248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.7E-38115234IPR015300DNA-binding pseudobarrel domain
CDDcd100179.94E-18117219No hitNo description
SMARTSM010192.5E-18119221IPR003340B3 DNA binding domain
PROSITE profilePS5086310.109119221IPR003340B3 DNA binding domain
PfamPF023629.0E-19119219IPR003340B3 DNA binding domain
PfamPF065073.1E-13245288IPR010525Auxin response factor
PfamPF065075.2E-9288321IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MGLAAEAQDA FKTMRLRVTD EPAIRRPFVT RVVHGWNEPS PGGPKWLEAS TDQHLDQHLP  60
LFNLPSKILC KVINVELRAE TDSDEVYAQI MLQPEADLSE PTSPDPEPHE PERCNVHSFC  120
KTLNASDMST HGGFSVLRRH VEECLPSLHM AQNPPCQELV AKDLHANEWH FRHIFRGQSR  180
RHLLTTAWSV FVSSKRLVAG DVFIFLRGEN GDLRVGVRRL MRQPNNMPSS VISSHNMHLG  240
VLATASHAIS TGTLFSIFYK PRTGRSEFIV SVNKYVEAKN HKMNVGVRTG RSEFIVSVNK  300
YVEAKNHKMN VGVRFKMRFE GLMAQLLAWG ACEHLRGQIP AVDLRSCIVM FSLLSSKIST  360
HVFTTDKSNG MSLLLFPVQI EFHHGNWNHL LQLISNRLSL LQDINVHNLL LHLPLLQNSL  420
QVLVCKNPQQ NLRKLSHFRD YSELKNYILQ AALYNYIKHN LVSLCFLHTA YIRFFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1314732452303Auxin response factor 1
4ldw_A1e-1314732452303Auxin response factor 1
4ldw_B1e-1314732452303Auxin response factor 1
4ldx_A1e-1314732452303Auxin response factor 1
4ldx_B1e-1314732452303Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002850G0020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235548.11e-153auxin response factor 7
SwissprotQ6YVY01e-150ARFG_ORYSJ; Auxin response factor 7
TrEMBLA0A1D8F0H51e-157A0A1D8F0H5_9POAL; Auxin response factor
STRINGOPUNC02G18520.21e-155(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.41e-130auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]