PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002857G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 709aa    MW: 78961 Da    PI: 6.4064
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002857G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.4e-23162262198
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++ +++aee+       ++++ +  +l+++d+++++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + 
  PH01002857G0060 162 FCKTLTASDTSTHGGFSVLRRHAEEClppldmtQNPPWQ--ELVVKDLHSNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RG 251
                      99****************************986555545..8************************************************..44 PP

                      SEE..EEEEE- CS
               B3  88 sefelvvkvfr 98 
                      +++el+v+v+r
  PH01002857G0060 252 ENGELRVGVRR 262
                      9999*****97 PP
2Auxin_resp1081e-35288370183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha+st++ F+v+Y+Pr+s+seFvv+v+k++++ ++k+ vGmRfkm+fe+++++err+sGt++gv  ++++ W +S WrsLk
  PH01002857G0060 288 ASHAISTGTLFSVFYKPRTSRSEFVVSVKKYLETKNHKMNVGMRFKMRFEGDEAPERRFSGTIIGVGSMSTSPWADSDWRSLK 370
                      789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-43151291IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-40158277IPR015300DNA-binding pseudobarrel domain
CDDcd100173.54E-21160262No hitNo description
SMARTSM010192.3E-22162264IPR003340B3 DNA binding domain
PROSITE profilePS5086311.307162264IPR003340B3 DNA binding domain
PfamPF023621.1E-20162262IPR003340B3 DNA binding domain
PfamPF065071.2E-33288370IPR010525Auxin response factor
PfamPF023099.0E-10566668IPR033389AUX/IAA domain
SuperFamilySSF542773.73E-10579655No hitNo description
PROSITE profilePS5174518.134582671IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MANSGAAGGS VYLVLKFLGP FWNAGIIPDS WGIELFDVKF LRNSHEIGPY GSSSDALYRE  60
LWHACAGPLV TVPRQGERVY YFPQGHMEQL EASTDQQLDQ HLPLFNLPSK ILCKVVHVEL  120
RAETDSDEVY AQIMLQPEAD LSEHTSPDPE SHEPERCNVH SFCKTLTASD TSTHGGFSVL  180
RRHAEECLPP LDMTQNPPWQ ELVVKDLHSN EWHFRHIFRG QPRRHLLTTG WSVFVSSKRL  240
VAGDAFIFLR GENGELRVGV RRLMRQLNNM PSSVISSHSM HLGVLATASH AISTGTLFSV  300
FYKPRTSRSE FVVSVKKYLE TKNHKMNVGM RFKMRFEGDE APERRFSGTI IGVGSMSTSP  360
WADSDWRSLK VQWDEPSAVP RPDRVSPWEL EPLVATNQQP PQPPARNKRA RPPASPSIAP  420
ELPPVFGLWK SPAESTQAFS FSGLQRTQLY PPSPNSILSS SLNAGFTPKN EPPSLTNNHF  480
YWPMRDPRAD SYSASVNKVQ PERKQEPTTA GCRLFGIEIS SAVEATSQVV TVSGVGQDQA  540
AASVEAESDQ LSQPSHVNKS DALATSSERS PHETQSPQVR SCTKVMVIMQ GMAVGRAVDL  600
TRLHGYDDLH CKLEEMFDIQ GELSASLKKW KIVYTDDEDD MMLVGDDPWP MVKRIYIYSY  660
EEAKQLTPKA KLPVIGDTIK PSPNKPSSES DMPQSDLDNN APVTDKDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.04939811360Auxin response factor 1
4ldw_A0.04939811360Auxin response factor 1
4ldw_B0.04939811360Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002857G0060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625501.10.0auxin response factor 7
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLA0A1D8F0H50.0A0A1D8F0H5_9POAL; Auxin response factor
STRINGORGLA02G0176700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]