PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002899G0130
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 212aa    MW: 23105.4 Da    PI: 10.2314
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002899G0130genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.11.7e-32108161255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  PH01002899G0130 108 PRMRWTTALHARFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 161
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575125No hitNo description
SuperFamilySSF466893.05E-16105161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-29106161IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-24108161IPR006447Myb domain, plants
PfamPF002492.3E-8109160IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MLQRNQLPNL SLRISPPAVS SAASCDITTA AKPLPTEPNA ETYAEGSGEV GFFANPSSGA  60
EPPGLSLGLG TPAHADAGRQ SHLQPQGCAF KRAARTSLPG SKRSVRAPRM RWTTALHARF  120
VHAVELLGGH ERATPKSVLE LMNVKDLTLA HVKSHLQMYR TVKGTDRSSS HITEGIPIAF  180
PEEILHCQLP ADRRPCRAKR RWPFYFMPYH E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-17109163458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-17109163458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-17109163357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-17109163357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-17109163357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-17109163357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-17109163458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-17109163458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-17109163458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-17109163458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-17109163458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-17109163458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002899G0130
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0948800.0FP094880.1 Phyllostachys edulis cDNA clone: bphylf040g11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466395.13e-78probable transcription factor GLK2
SwissprotQ9FJV52e-42KAN4_ARATH; Probable transcription factor KAN4
TrEMBLF2ED932e-81F2ED93_HORVV; Predicted protein
STRINGPavir.Ia00330.1.p5e-83(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65543750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.21e-45G2-like family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]