PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002918G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 225aa    MW: 24777 Da    PI: 8.45
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002918G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.2e-09106153455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++Y + Lq
  PH01002918G0050 106 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYTQALQ 153
                      8*************************9....677*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.83E-8100157No hitNo description
SuperFamilySSF474591.83E-16100168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.37102152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-17103169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-6106153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9108158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAITQIADPN LDKFSVLSSL IPASQSITNL HKLVSLGDKI VNKRADPEAK RLKPMKSSDN  60
NDNLRSEAQT DSGSASKAVD KNPTPPELPK QDYIHVRARR GEATDSHSLA ERARREKISE  120
RMKILQDLVP GCNKVIGKAS VLDEIINYTQ ALQRQVEFLS MKLEAVSAHV NDGIVAFPSK  180
DFGAQPYHTA PGLTFDPQTP REYAQGSTSE WLHMQIGNAY ERVT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002918G0050
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2426450.0AK242645.1 Oryza sativa Japonica Group cDNA, clone: J090025G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645823.11e-113transcription factor BHLH094-like
SwissprotQ69WS31e-114BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A0E0E8D61e-113A0A0E0E8D6_9ORYZ; Uncharacterized protein
STRINGOMERI07G04160.11e-114(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-68BIG PETAL P