PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002927G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 191aa    MW: 19767.4 Da    PI: 6.3546
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002927G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94.2e-0989112326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      ++ C ++ ++G C++G +CkF+H+
  PH01002927G0060  89 EPDCTYYVKFGSCRFGMKCKFNHP 112
                      789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.90686114IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-689112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-590114IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MADADAKPPP KSDPYASPIA SISPSSPSSG GGDAADAAAI ENQLADELPN PSGWEDGPIP  60
SGGDEVSGEK LPASAAADSR PRFPRRHGEP DCTYYVKFGS CRFGMKCKFN HPARKKKNRV  120
KGSGSGGSGS NSSSNKASSP DDEQESRQSG FATENLEANH EALHGPTAEA FDQPKIANKT  180
NLHKSGLSTN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002927G0060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3705173e-48AK370517.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111P01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620300.12e-43zinc finger CCCH domain-containing protein 65 isoform X1
RefseqXP_015620302.13e-43zinc finger CCCH domain-containing protein 65 isoform X3
RefseqXP_015620304.12e-43zinc finger CCCH domain-containing protein 65 isoform X5
RefseqXP_015620306.12e-43zinc finger CCCH domain-containing protein 65 isoform X7
SwissprotQ2QTY23e-44C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A446U0P71e-47A0A446U0P7_TRITD; Uncharacterized protein
TrEMBLM7ZGS81e-48M7ZGS8_TRIUA; Zinc finger CCCH domain-containing protein 65
STRINGOPUNC12G07750.12e-46(Oryza punctata)
STRINGTraes_5BS_735791EC5.22e-48(Triticum aestivum)
STRINGTRIUR3_24689-P12e-49(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.11e-10zinc finger nuclease 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]