PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002927G0090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 1653aa    MW: 184656 Da    PI: 8.5376
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002927G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003515331556122
                       EEET..TTTEEESSHHHHHHHHHH CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                       ++C    C++sFs++ +L  H r 
  PH01002927G0090 1533 FSCDieGCDMSFSTQQDLLLHKRD 1556
                       899999***************985 PP
2zf-C2H211.10.001316161642123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       y C+   Cg++F+  s++ rH r+  H
  PH01002927G0090 1616 YACKepGCGQTFRFVSDFSRHKRKtgH 1642
                       789999****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005582.0E-5155308IPR003347JmjC domain
PROSITE profilePS5118415.452155353IPR003347JmjC domain
SuperFamilySSF511971.37E-8170241No hitNo description
PfamPF023735.4E-13188243IPR003347JmjC domain
PfamPF077272.4E-18484540IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
PfamPF077276.2E-15542611IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
SMARTSM003559.115331555IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.28115561585IPR007087Zinc finger, C2H2
SMARTSM003551015561580IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.65E-515571588No hitNo description
Gene3DG3DSA:3.30.160.603.5E-415581584IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028015581580IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.2E-1015851610IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.42715861615IPR007087Zinc finger, C2H2
SMARTSM003550.001815861610IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028015881610IPR007087Zinc finger, C2H2
SuperFamilySSF576671.17E-915961640No hitNo description
Gene3DG3DSA:3.30.160.601.4E-916111638IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.2716161642IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.49216161647IPR007087Zinc finger, C2H2
PROSITE patternPS00028016181642IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1653 aa     Download sequence    Send to blast
MEIEPEASRY GICKIVPPLP APPREATVQR LKASFTSNAA TSASAGDAVP APTFPTRLQQ  60
VGLSTKNRRA ANRRVWESGE RYTLEAFRSK ARDFELPRHA TPPKNATPLQ LEALFWGACA  120
ARPFNVEYGN DMPGSGFAVP EELELDASNA AAPRDVGETE WNMRVAPRAG GSLLRAMGRD  180
VAGVTTPMLY VAMLYSWFAW HVEDHELHSL NYLHFGKRKT WYGVPRDAML AFEDAVRVHG  240
YADDLNAIKI LRNHDTTRLP QKERLGLAPI LSCLCPISPS PSTAVMNVHL GVASLVNDKV  300
LSCEILLKDA RTFHVTVGVI KLKEEVTHGV STSWYLSKGC KISLKSKIEF ETNGAWLLFQ  360
IPDGFMKSVA FQTLNEKTTV LSPEVLLSAG VPCCRYFSKA DWFKTLENLL SHSLELIILV  420
LATELIFVIR SIVLLAKLIT ISELVQRLLG ILVMIVRAEK RLFLAIAIEA LLVSVLDDTD  480
IFLPSWVYKV KTKSYGSVER YKARLVVKGF QQAYGRDYDK TFAPIAHMTT VCTLIAVAVR  540
GRTLLLLYVD DMLITRDGMD YVAFVKKKLS KKFMMADLGL WSYFMGIEVH SDSDSYYLFQ  600
HRYVQDLLSS FVKSLTSSYL YCSTFSCGSK VLKIGNQYST GHLPSSDYRY NRPDYAAGIT  660
GNYTVTGFNC GEATNIATPR WLQVAKEAAI RRASTNCGPM VSHYQLLYKL ALSLRPREPT  720
NFHTVPRSSR LRDKKKNEGN IMVKEKFVGS VTENNNLLSI LLDKGSCIIV PEIAFPLPSF  780
PMTMEPKVTF KQSLTAGSCS ISQQAAEDMP VDVAADKITG TESMSGSQSA SETSFSACNR  840
RKLYETKYGK VDTAALCLST SEMRSGEIDK DRSHQGGGLL DQGRLPCVQC GILSFACVAI  900
IQPREAAVQF IMSRECISSS AKHGEISKSD DISNWITENR EVVRQQGQAS GTDDNVIHSI  960
SLAQVSDRCR QLYRSDTNGC TSALGLLASA YGSSDSEEET ADNVSTDSEK NDAANQGTNT  1020
RFLGTSVSSS STVDRQKTNS HLYEEECEVR TTASLMKPIE HNSWPITQSS RDTDIGHFTG  1080
LGQPGTSCEQ CPVYLDSVDG LTKSEYPRAE SAAKVIAEEL GMKHDWKDIT FEKATEEDIR  1140
TIQLALQDED AEPTSSDWAV KMGINIYYSA KQSKSPLYSK QIPYNSIIYK AFGQESPDIM  1200
TDYGGQISGT TKKKVAGWWC GKVWMSNQVH PLLAREHEEQ HNHDIVYSKA ILIANSNDKI  1260
QDEPSMRCAT LINRSPSKRI SGRKRGDSID KSRAKKKRCT ACNEATLHCG GLGMNSEARY  1320
HHPGNSDDHD KHEDGDEIEE APSTQQYQQH KLQNMNKKSS SKKQKDDKRN SNFHELYDED  1380
NDVDSWLNLD SDGTTIGNWD NSPQRGLDAV KVKSGGKLQG IKRKSSKGKV SDNLSNGDKK  1440
LQKMNKKSGS KKQKNDKINR QFAEDHNEDN TVNYFHNVER GDEATLDNWD QIPDEKTNDV  1500
KVKSRGKMQS GKRKTSKRQA SEGFRTGDKE PKFSCDIEGC DMSFSTQQDL LLHKRDICPV  1560
KGCNKKFFCH KYLLQHRKVH MDERPLKCAW KGCKKTFKWP WARTEHMRVH TGVRPYACKE  1620
PGCGQTFRFV SDFSRHKRKT GHCCDKIRKS ST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A8e-571533164223132Lysine-specific demethylase REF6
6a58_A8e-571533164223132Lysine-specific demethylase REF6
6a59_A8e-571533164223132Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
112821297RKRGDSIDKSRAKKKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002927G0090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664493.10.0PREDICTED: lysine-specific demethylase REF6-like
TrEMBLB8BP430.0B8BP43_ORYSI; Uncharacterized protein
STRINGOB12G17360.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.14e-82relative of early flowering 6