PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002928G0170
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 261aa    MW: 29460.3 Da    PI: 7.8562
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002928G0170genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +lv  ++++G  +W++ ++  g+ R++k+c++rw +yl
  PH01002928G0170 14 RGPWTAEEDRILVAHIERHGHSNWRALPKQAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-25564IPR009057Homeodomain-like
PROSITE profilePS5129422.456965IPR017930Myb domain
SMARTSM007171.4E-131363IPR001005SANT/Myb domain
PfamPF002491.1E-141461IPR001005SANT/Myb domain
SuperFamilySSF466893.38E-221588IPR009057Homeodomain-like
CDDcd001678.94E-111661No hitNo description
PROSITE profilePS500906.64462126IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.0E-1365130IPR009057Homeodomain-like
SMARTSM007178.766128IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRAPCCEKM GLKRGPWTAE EDRILVAHIE RHGHSNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF NREEEDAIIH LHDLLGNSKN YLVLVFWTRG FLKSWLRHWL PGRTDNEIKN  120
VWHTDLKKRL EPKPSGQAQG KTSAPKRKTK KPEAVSALDG LTTVPVSPEQ SLSTSATTDY  180
SMASSLDNTD NFTSEEELQI DDSFWFETLA MTVDSSCSRM QSGDLFGADS ASPPSSGNDD  240
MDFWLRLFMQ AGDMKCLSQI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-171213025128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002928G0170
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0719211e-104HM071921.1 Leymus racemosus Myb3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169007.11e-118myb-related protein Myb4-like
SwissprotQ6K1S61e-107MYB30_ORYSJ; Transcription factor MYB30
TrEMBLA0A3B6PM531e-119A0A3B6PM53_WHEAT; Uncharacterized protein
TrEMBLA0A446WER01e-119A0A446WER0_TRITD; Uncharacterized protein
STRINGMLOC_43806.11e-119(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-69myb domain protein 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Lv Y, et al.
    The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression.
    Plant Physiol., 2017. 173(2): p. 1475-1491
    [PMID:28062835]