PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002980G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 171aa    MW: 19215 Da    PI: 10.5352
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002980G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.9e-0692114123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F r  nL+ H r H
  PH01002980G0030  92 FVCEVCNKGFQREQNLQLHRRGH 114
                      89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.83E-590115No hitNo description
Gene3DG3DSA:3.30.160.601.6E-691114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121717.7E-692114IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.09492114IPR007087Zinc finger, C2H2
SMARTSM003550.004192114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MAAASSAPFF GLGDTQMQPQ PSNPLQQNSA PAPAAVTAPK KKRNQPGNPS KSPLSYQQPW  60
IYIYINKDSI PSNPDAEVIA LSPRTLLATN RFVCEVCNKG FQREQNLQLH RRGHNLPWKL  120
KQKNPKETRR RVYLCPEPTC VHHDPSRALG DLTGVKKHYC RKHGEKKWNL *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002980G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1011441e-120FP101144.1 Phyllostachys edulis cDNA clone: bphyem208d18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462813.12e-81protein indeterminate-domain 5, chloroplastic
RefseqXP_021309955.12e-81protein indeterminate-domain 5, chloroplastic
SwissprotQ8RWX73e-65IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLA0A3L6T3W68e-84A0A3L6T3W6_PANMI; Protein indeterminate-domain 5, chloroplastic-like
STRINGSb02g032400.17e-81(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-62indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]