PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003034G0090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 143aa    MW: 16476.9 Da    PI: 10.735
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003034G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.62.6e-133185357
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57
                     e kr  rk++NRe+ArrsR RK++ ++ L+   k+L+++N++L   l++ +++  
  PH01003034G0090 31 EKKRKQRKESNRESARRSRMRKQQHLDDLTSQGKQLKNQNQQLSMALSMTTQNLV 85
                     569****************************************999888777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.2E-112684No hitNo description
SMARTSM003381.5E-112993IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.6223194IPR004827Basic-leucine zipper domain
PfamPF001703.1E-103179IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.38E-113384No hitNo description
CDDcd147021.39E-123482No hitNo description
PROSITE patternPS0003603751IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MTMSSGTSSG SSQGARSFRL EDDLDLQARM EKKRKQRKES NRESARRSRM RKQQHLDDLT  60
SQGKQLKNQN QQLSMALSMT TQNLVAVQAQ NSVLQTQKME LESRLCALRM FWLSCSWWQR  120
RCEVGLYWLL KVLLYAPDAS LS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14552RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003034G0090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0987971e-99FP098797.1 Phyllostachys edulis cDNA clone: bphylf050c02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660520.12e-50PREDICTED: ocs element-binding factor 1-like
TrEMBLA0A0A9GYA32e-49A0A0A9GYA3_ARUDO; Uncharacterized protein
STRINGOB09G13080.11e-49(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37403276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.15e-19basic leucine-zipper 44