PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003057G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 300aa    MW: 32557.5 Da    PI: 6.3155
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003057G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.52.1e-26143201259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs++pr+YY+C+s   C+++k vers   p v+++tY  eH h+
  PH01003057G0080 143 TDLWAWRKYGQKPIKGSPYPRGYYKCSSLkACMARKMVERSPAKPGVLIVTYIAEHCHS 201
                      699************************9989**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.77137203IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-26138203IPR003657WRKY domain
SuperFamilySSF1182901.11E-23140203IPR003657WRKY domain
SMARTSM007742.7E-31142202IPR003657WRKY domain
PfamPF031069.9E-22144200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEFFNDWDLE AVVRSCSSAV PSNSEAEPPA VRRDGARREI VGRVASPEFV GQPVRAAASL  60
YELEYLDLDH KLPRAPLLIT PSSREHDVLI SFPAASTSGQ LLPRKQHGRK PGVRTASDPK  120
RSKKSQLKKV VCEVPVADGG VSTDLWAWRK YGQKPIKGSP YPRGYYKCSS LKACMARKMV  180
ERSPAKPGVL IVTYIAEHCH SVPTQLNALA GTTRHKPASP DHQPSQSHGA TSDEAAAKRE  240
DSADTCSMAV DGGAETADDE TEPWAPVETG LDDFFGPFDD DFDNFLEDDG GVLGRRLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-18124204280Disease resistance protein RRS1
5w3x_D7e-18124204280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003057G0080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703062e-34HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961083.11e-139WRKY transcription factor 22
TrEMBLA0A3L6SXR11e-141A0A3L6SXR1_PANMI; WRKY transcription factor 22-like
STRINGSi022676m1e-139(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-40WRKY family protein