PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003083G0160
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 246aa    MW: 26656.6 Da    PI: 4.985
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003083G0160genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.4e-12156204655
              AP2   6 VrwdkkrgrWvAeIrdpseng.kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +r++k +g+W A+I      g  r  k ++lg+f t+ eAa+a++ a+ +l+g
  PH01003083G0160 156 IRRRK-DGKWQARIGKI---GeSRdtKDIYLGTFETEVEAAEAYDLAAIELRG 204
                      78777.9******9885...332236**********99*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.84853133IPR001471AP2/ERF domain
SMARTSM003800.002784139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-5102134IPR001471AP2/ERF domain
PROSITE profilePS5103216.186151212IPR001471AP2/ERF domain
PRINTSPR003679.5E-5153164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-16156212IPR001471AP2/ERF domain
SMARTSM003804.6E-20156218IPR001471AP2/ERF domain
CDDcd000184.27E-17156214No hitNo description
PfamPF008473.7E-8157204IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-14157214IPR016177DNA-binding domain
PRINTSPR003679.5E-5194214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MATVHPHSSE SDPTTPPPPP PPSQEKEEQQ QQHDAPEVGA DAEGGGEIAA LDKQLAVGEE  60
SKAAGGGKLV AEAMRKYAAP RSSRFHGVTR WAGKTNPRAG GGSNVTEENA ARAHDLAALK  120
YWGTGPNTKL NFNLSEYEKE IEIMKTMSQD EFVAYIRRRK DGKWQARIGK IGESRDTKDI  180
YLGTFETEVE AAEAYDLAAI ELRGVHAVTN FDINNYCEDG LKKLEGSSEM AKLEGQPETM  240
KLAGQ*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003083G0160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0089265e-72BT008926.1 Triticum aestivum clone wde1f.pk001.h1:fis, full insert mRNA sequence.
GenBankBT0095465e-72BT009546.1 Triticum aestivum clone wr1.pk148.f7:fis, full insert mRNA sequence.
GenBankDQ2865705e-72DQ286570.1 Triticum aestivum aintegumenta-like protein (ANTL1B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977550.11e-104AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-36AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLK3Y9551e-103K3Y955_SETIT; Uncharacterized protein
STRINGSi010747m1e-104(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-38AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]