PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003110G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 302aa    MW: 31718.3 Da    PI: 7.2189
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003110G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.45.3e-32127184259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers +dp+vv++tYeg+H h+
  PH01003110G0050 127 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSCDDPSVVITTYEGQHCHH 184
                      8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-33111185IPR003657WRKY domain
SuperFamilySSF1182904.97E-28118185IPR003657WRKY domain
PROSITE profilePS5081129.528121186IPR003657WRKY domain
SMARTSM007744.2E-37126185IPR003657WRKY domain
PfamPF031062.9E-25127184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAGAAGDRPE GVGGGGDWPF AGDAFAEYSS AVFAELGWPG GLAAGAEELT ALDLPAPAAV  60
ARSEEMPARS GDAGASSSSS GDGAVQENAE KRAAEAASVK PAIKKGQKRA RQPRFAFMTK  120
SEIDHLEDGY RWRKYGQKAV KNSPFPRSYY RCTNSKCTVK KRVERSCDDP SVVITTYEGQ  180
HCHHTASFQR GGGAAHVHSA AAVALAEQMS FVSAQQQLYS LPPLHPQMIN PPSSETVVSS  240
MSTTSLQQLN GCEDLRRTSY SPTASTTMAQ SPSSSSSLVP PAVSFDKGLL DDIVPPGVRH  300
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25116183774Probable WRKY transcription factor 4
2lex_A1e-25116183774Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003110G0050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0978611e-161FP097861.1 Phyllostachys edulis cDNA clone: bphyst009m19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173159.11e-125probable WRKY transcription factor 57
TrEMBLF2E2C81e-135F2E2C8_HORVV; Predicted protein
STRINGMLOC_59259.21e-139(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.23e-54WRKY DNA-binding protein 57