PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01003202G0120

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

YABBY

Protein Properties

Length: 237aa MW: 25153.9 Da PI: 9.8756

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01003202G0120	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	179.3	2.3e-55	20	191	24	170
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes....hldeslkee............lleelkveeenlksnvekeesastsvssekl 101 v vP slfk+vtvrCGhC++llsvnl+ aa h+++sl + + +++l + + + + + + +s++ PH01003202G0120 20 VGVPCGSLFKTVTVRCGHCANLLSVNLRGLLLPPAAPPanqlHFGHSLLSPtsphglldevafQ-------TSSLLMDQASATLSGITGRSNSS 106 89************************999544443300014445554448899966665552.......44433333222211111111111 PP YABBY 102 ...............senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++ e+p+ p + rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl PH01003202G0120 107 casnvpampmpaakpAQQQEPELPKSAPpATRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 191 11122223558887666777788886544****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.2E-55	20	191	IPR006780	YABBY protein
SuperFamily	SSF47095	6.41E-8	130	184	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.5E-4	139	183	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MALGLVDMSG TWRVVQRRYV GVPCGSLFKT VTVRCGHCAN LLSVNLRGLL LPPAAPPANQ 60 LHFGHSLLSP TSPHGLLDEV AFQTSSLLMD QASATLSGIT GRSNSSCASN VPAMPMPAAK 120 PAQQQEPELP KSAPPATRPP EKRQRVPSAY NRFIKDEIQR IKAGNPDITH REAFSAAAKN 180 WAHFPHIHFG LMPDQGLRKT FKTQDGAEDM LLKDGLYAAA AAAAAAAAAN MGVTPF*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01003202G0120

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB274016	0.0	AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds.
GenBank	AK106784	0.0	AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020155221.1	1e-131	protein YABBY 4-like isoform X2
Swissprot	A2X7Q3	1e-109	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	1e-109	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	A0A3B6QIK7	1e-129	A0A3B6QIK7_WHEAT; Uncharacterized protein
TrEMBL	A0A453P642	1e-129	A0A453P642_AEGTS; Uncharacterized protein
STRING	Traes_6DL_59DB06B9F.1	1e-126	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	1e-49	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]