PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003236G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 311aa    MW: 33858.3 Da    PI: 8.9001
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003236G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.47e-134690147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
  PH01003236G0020 46 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 90
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.34E-164096IPR009057Homeodomain-like
PROSITE profilePS5129414.3124195IPR017930Myb domain
TIGRFAMsTIGR015572.3E-184493IPR006447Myb domain, plants
SMARTSM007172.1E-104593IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-64586IPR009057Homeodomain-like
PfamPF002491.1E-104690IPR001005SANT/Myb domain
CDDcd001677.16E-84891No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGRRRRQAAA AGGGCRAAAS PMAVPLAVAE EEARKVRKPY TITKSRESWT EPEHDKFLEA  60
LQLFDRDWKK IEAYVGSKTV IQIRSHAQKY FMKVQKNGTG EHLPPPRPKR KAAHPYPQKA  120
SKNVSQAVLS QQPPPLREQG CAMSMDTTTV VRNTNANAAV PSWDNAVVQP SSASHTQGTG  180
AVATNNCSSS IESPSGTWPT SEAVEQENVL PPPPLRVTHA AMPDFAQVYN FLGSIFDPDT  240
SGHLQRLKAM DPIDVETVLL LMRNLSMNLT SPDFEAHRKL LSSHGSGGDQ IKSEGMENPG  300
SPESCHLPFM *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003236G0020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656359.10.0PREDICTED: protein REVEILLE 6-like isoform X3
SwissprotQ8H0W33e-94RVE6_ARATH; Protein REVEILLE 6
TrEMBLJ3MGQ60.0J3MGQ6_ORYBR; Uncharacterized protein
STRINGOB06G32000.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.17e-79MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]