PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01003237G0170

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

MYB_related

Protein Properties

Length: 836aa MW: 89087.5 Da PI: 9.6042

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01003237G0170	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.3	2e-09	257	301	2	44
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 ++W++eEd lv +v++ G g+W I ++ ++Rt+ q+ rw PH01003237G0170 257 KPWSKEEDSELVAGVQKCGEGNWLDILHKYTfdNTRTPVQLSQRW 301 68******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-12	251	308	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.143	251	309	IPR017930	Myb domain
SuperFamily	SSF46689	1.17E-13	254	307	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-9	255	307	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-7	257	301	IPR001005	SANT/Myb domain
CDD	cd11660	9.85E-19	259	306	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 836 aa Download sequence Send to blast
MAAVPAPAPA AGTGKRKRGF SEDDVYLLLH RYTPATILTA LQEVAQHAER RDIDWRELVG 60 KTATGITSAR EYQMLWRHFA YRHDLAEKFD DSAQPLGDES DLECEVEPVP TPSNEALIEA 120 STFAKYEPIQ AWLMHNVRFV QKLDRCLILH LEDKALHGFT RNQRITKCFW LYGIKNILIS 180 GSSREQASSH RASSEVPVLN APNEKLPRVP SDKQLAQSHR LTNGTSPVSN SKQTSHTGLS 240 PDPLDANGPP KKKKKPKPWS KEEDSELVAG VQKCGEGNWL DILHKYTFDN TRTPVQLSQR 300 WVLICKRQGS TKPANAKPAS VASSEERKAA QKAFSMALDM PMTGLSTLRS GALQQSIQHP 360 SPVFGTMTPE VKSATAPSSL PVPVPVPVPV AVPGPVPVQV QLLLPQMQQA PAQAPPLKVS 420 NTSNKSRNNS KKQAAQPNPT NGPSSIQAAA IAAGGRIATP SVATNLLKAA QSTKAVHIRS 480 RGTGSSKSST SSKASTMAGE PGTQLGSAQH PEPPNTSAPM SSPSVLTTHA TELVHGVSEV 540 AGVNPPGQSA VAHLSETKRT LSTTPVSGPC DNVENDDDST FCVVTLEVLF PEDAKQLDIV 600 DPKDEEIIDP KDADMIEFDR FVAQGCLNMN YLDKSKTVKI APGAQDVGSQ EKQPKPLSAA 660 GKSNPVSAGA PSTGKKTKTL PHGATSTKTG ASSGVVGTGN ASVQNNAGGG KAAAPATTGS 720 QKTVQKQHTM NSKGNGMPES AALGTGTPAN SQEDGRTLFG ATVTRIWRLQ ACSNLEHQRL 780 TQLGLRSERE MLLEKTIGAK DVRRPTAITT STRSTLDQAV LTLLQLYYVS SGNNL*

Sequence ? help Back to Top

Protein Sequence Length: 836 aa Download sequence Send to blast

MAAVPAPAPA AGTGKRKRGF SEDDVYLLLH RYTPATILTA LQEVAQHAER RDIDWRELVG  60
KTATGITSAR EYQMLWRHFA YRHDLAEKFD DSAQPLGDES DLECEVEPVP TPSNEALIEA  120
STFAKYEPIQ AWLMHNVRFV QKLDRCLILH LEDKALHGFT RNQRITKCFW LYGIKNILIS  180
GSSREQASSH RASSEVPVLN APNEKLPRVP SDKQLAQSHR LTNGTSPVSN SKQTSHTGLS  240
PDPLDANGPP KKKKKPKPWS KEEDSELVAG VQKCGEGNWL DILHKYTFDN TRTPVQLSQR  300
WVLICKRQGS TKPANAKPAS VASSEERKAA QKAFSMALDM PMTGLSTLRS GALQQSIQHP  360
SPVFGTMTPE VKSATAPSSL PVPVPVPVPV AVPGPVPVQV QLLLPQMQQA PAQAPPLKVS  420
NTSNKSRNNS KKQAAQPNPT NGPSSIQAAA IAAGGRIATP SVATNLLKAA QSTKAVHIRS  480
RGTGSSKSST SSKASTMAGE PGTQLGSAQH PEPPNTSAPM SSPSVLTTHA TELVHGVSEV  540
AGVNPPGQSA VAHLSETKRT LSTTPVSGPC DNVENDDDST FCVVTLEVLF PEDAKQLDIV  600
DPKDEEIIDP KDADMIEFDR FVAQGCLNMN YLDKSKTVKI APGAQDVGSQ EKQPKPLSAA  660
GKSNPVSAGA PSTGKKTKTL PHGATSTKTG ASSGVVGTGN ASVQNNAGGG KAAAPATTGS  720
QKTVQKQHTM NSKGNGMPES AALGTGTPAN SQEDGRTLFG ATVTRIWRLQ ACSNLEHQRL  780
TQLGLRSERE MLLEKTIGAK DVRRPTAITT STRSTLDQAV LTLLQLYYVS SGNNL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	249	255	PKKKKKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01003237G0170

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003572605.1	0.0	uncharacterized protein LOC100823787
TrEMBL	I1IAE3	0.0	I1IAE3_BRADI; Uncharacterized protein
STRING	BRADI3G45450.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4684	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	1e-33	MYB_related family protein