PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003249G0180
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 198aa    MW: 21361.8 Da    PI: 6.8531
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003249G0180genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH413.1e-136388227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     ++++C+f+++tG Ck+G+ CkF+H++
  PH01003249G0180 63 DQPECQFYMKTGDCKFGAVCKFHHPK 88
                     689*********************96 PP
2zf-CCCH391.3e-12108134127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C f++r+G+Ck+G++CkF H++
  PH01003249G0180 108 PGEPVCTFYSRYGICKFGPNCKFDHPM 134
                      5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.7E-56188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5116189IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-106388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-66491IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-56789IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7107134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99107135IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-10109134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6110135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4112132IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGSSSADDQQ RTPGTTQYYS GSRVQRETTG MGDHGMFPSY QAGSVPVGVY AVQGENVFPE  60
RPDQPECQFY MKTGDCKFGA VCKFHHPKER LIPAPNCALS QLGLPLRPGE PVCTFYSRYG  120
ICKFGPNCKF DHPMGALMYG TSTSPTGDVP TMHYQLAPSP GHSERLLDGG SGRSHRIPQP  180
DSQQIPSGDG STEREAP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003249G0180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115110.0AK111511.1 Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576637.11e-124zinc finger CCCH domain-containing protein 66 isoform X2
RefseqXP_010237293.11e-124zinc finger CCCH domain-containing protein 66 isoform X1
SwissprotQ2QT651e-119C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0Q3IKS41e-123A0A0Q3IKS4_BRADI; Uncharacterized protein
TrEMBLI1IIN51e-123I1IIN5_BRADI; Uncharacterized protein
STRINGPavir.Ca02037.1.p1e-126(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.31e-54zinc finger nuclease 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]