PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01003268G0110

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 203aa MW: 22513 Da PI: 5.7773

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01003268G0110	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101.5	1.2e-31	7	124	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGf+F P+deelvv++L++k++ +++ +v++++ +++++Pw+L+ k+ ++ ++wyfFs++ k +r+ +g W+ g d++v s PH01003268G0110 7 LPPGFHFFPSDEELVVHFLRRKASLLPCQP-DVVPTLLMNRYDPWELNGKALESGNQWYFFSHATK--------SRTSPNGHWSPIGADETVSS 91 79***********************999.99**********976667789**9865........577889********99 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g +vglkk Lvf g+ ++ kt+Wvmhey+l PH01003268G0110 92 -GGCNVGLKKKLVFSIGEPFEAIKTNWVMHEYHL 124 .99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-43	4	165	IPR003441	NAC domain
PROSITE profile	PS51005	40.122	7	166	IPR003441	NAC domain
Pfam	PF02365	1.2E-20	8	124	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MGGASNLPPG FHFFPSDEEL VVHFLRRKAS LLPCQPDVVP TLLMNRYDPW ELNGKALESG 60 NQWYFFSHAT KSRTSPNGHW SPIGADETVS SGGCNVGLKK KLVFSIGEPF EAIKTNWVMH 120 EYHLLDGSYN CSSSSTSSGS SKRSHKKKGH SNTESNNWVI CRVFESSCDS QVSFHEEGME 180 LSCLDEVFLS LDDYDEVSLP NN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-34	6	171	16	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-34	6	171	16	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-34	6	171	16	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-34	6	171	16	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-34	6	171	19	173	NAC domain-containing protein 19
3swm_B	2e-34	6	171	19	173	NAC domain-containing protein 19
3swm_C	2e-34	6	171	19	173	NAC domain-containing protein 19
3swm_D	2e-34	6	171	19	173	NAC domain-containing protein 19
3swp_A	2e-34	6	171	19	173	NAC domain-containing protein 19
3swp_B	2e-34	6	171	19	173	NAC domain-containing protein 19
3swp_C	2e-34	6	171	19	173	NAC domain-containing protein 19
3swp_D	2e-34	6	171	19	173	NAC domain-containing protein 19
4dul_A	2e-34	6	171	16	170	NAC domain-containing protein 19
4dul_B	2e-34	6	171	16	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01003268G0110

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634043.1	1e-117	NAC domain-containing protein 104
Swissprot	Q8GWK6	9e-63	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A0E0KQW6	1e-120	A0A0E0KQW6_ORYPU; Uncharacterized protein
STRING	OPUNC04G11290.1	1e-121	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3667	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-62	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]