PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003417G0160
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 247aa    MW: 27004.5 Da    PI: 8.7837
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003417G0160genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.3e-1893147256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tkeq   Le+ F+++++++ +++  LA++l+L  rqV vWFqNrRa+ k
  PH01003417G0160  93 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALARQLNLRSRQVEVWFQNRRARTK 147
                      78889************************************************98 PP
2HD-ZIP_I/II121.64e-3993181190
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      +kk+rl+keq++lLE+ F+e+++L+p++Kv+lar+L+l+ rqv+vWFqnrRARtk+kq+E+d+  Lkr++++l++en+rL++e ++Lr +
  PH01003417G0160  93 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALARQLNLRSRQVEVWFQNRRARTKLKQTEVDCGLLKRCCETLTDENRRLHRELQQLR-A 181
                      69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-1883150IPR009057Homeodomain-like
PROSITE profilePS5007117.00689149IPR001356Homeobox domain
SMARTSM003895.7E-1491153IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-1791152IPR009057Homeodomain-like
PfamPF000462.6E-1593147IPR001356Homeobox domain
CDDcd000861.09E-1493150No hitNo description
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
SMARTSM003402.0E-20149192IPR003106Leucine zipper, homeobox-associated
PfamPF021832.5E-10149182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAQEEVGLAL GLSLGSGRHH RKEQPPSQPC VLEPSLTLRL PADSGLTAPG RPLAAAVKRE  60
LRADDDDDEA AERALYSADS SAAADDDEGC NSRKKLRLTK EQSALLEDRF KEHSTLNPKQ  120
KVALARQLNL RSRQVEVWFQ NRRARTKLKQ TEVDCGLLKR CCETLTDENR RLHRELQQLR  180
ALNHPQPAAG FFMAQLPAAT LSICPSCERL AGQPPPAADR PTKAAGPGRG RAAHFQFSPF  240
TNSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19197SRKKLRL
2141149RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003417G0160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0989840.0FP098984.1 Phyllostachys edulis cDNA clone: bphylf047o12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983488.11e-114homeobox-leucine zipper protein HOX15
SwissprotQ7G7372e-85HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBLK4AE821e-113K4AE82_SETIT; Uncharacterized protein
STRINGSi037189m1e-113(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-62HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]