PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003462G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 274aa    MW: 29526.1 Da    PI: 8.8258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003462G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.22.2e-06191231954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+r+ +++  L++l+P        K++ a++L +A  Y+k L
  PH01003462G0030 191 ARLRRERVSERLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 231
                      599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.73E-11173236No hitNo description
PROSITE profilePS5088814.449182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-10188248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-12188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-14188248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDTFGWAGGQ HDDVYLPRSV GQVSCGRFEL DDAFLGACFG QLHCDGIGGG DAGACHVSSN  60
YGTGGGSAGF ASDPLGFLSS GVDVFASVVD DAGAHDGLLD TALAFSRDLA YGEGDGGARK  120
EEGDHHNNKH HLRPGRPRPH RRSGRRVRAG VKEMIYRAAA MRPVNLGTEA VADKPRRKNV  180
RISSDPQTVA ARLRRERVSE RLRVLQKLVP GGSKMDTASM LDEAASYLKF LKSQVQALET  240
PRQQQHHHHH NQHGQVTAAL LQPPPCHSWI CKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172178DKPRRKN
2173178KPRRKN
3191196RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003462G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1002081e-108AK100208.1 Oryza sativa Japonica Group cDNA clone:J023042H10, full insert sequence.
GenBankAK1061191e-108AK106119.1 Oryza sativa Japonica Group cDNA clone:001-207-E08, full insert sequence.
GenBankAP0032731e-108AP003273.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0510F09.
GenBankAP0033811e-108AP003381.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0692C11.
GenBankAP0149571e-108AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629328.12e-49transcription factor LATE FLOWERING-like
RefseqXP_015629344.12e-49transcription factor LATE FLOWERING-like
TrEMBLA0A287LFH71e-59A0A287LFH7_HORVV; Uncharacterized protein
STRINGOGLUM01G32180.17e-49(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-30bHLH family protein