PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003477G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Dof
Protein Properties Length: 172aa    MW: 17656.8 Da    PI: 9.7191
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003477G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof65.58.8e-2120542862
           zf-Dof 28 qPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                      Pr+fCk+CrryWtkGG lrnvPvGgg+rk+ +ss
  PH01003477G0030 20 APRHFCKSCRRYWTKGGCLRNVPVGGGSRKSSSSS 54
                     7*****************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088416.088152IPR003851Zinc finger, Dof-type
PfamPF027012.3E-151952IPR003851Zinc finger, Dof-type
ProDomPD0074787.0E-82143IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MTAVAVRSLV TVAAGRAARA PRHFCKSCRR YWTKGGCLRN VPVGGGSRKS SSSSATPKNP  60
KRSKNSKRRR IAPAPEPTPS TDANTATAAG ADAALTGAAA KGNAEDPATP PSVDEVFTDP  120
SVALGIGLTD ASGKELPDTS PFEWPSGCDL GSYRETGVFA DTDPVLFLNL P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16670KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003477G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957110.13e-47dof zinc finger protein MNB1A
TrEMBLK3ZVZ38e-46K3ZVZ3_SETIT; Uncharacterized protein
STRINGSi030774m1e-46(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.15e-11DOF zinc finger protein 1