PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003506G0180
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 372aa    MW: 40701 Da    PI: 4.465
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003506G0180genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-18118167255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+G+r+++ +g+W+AeIrdp++     r++lg+f +aeeAa+a++a +++++g
  PH01003506G0180 118 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNSAEEAARAYDAEARRIRG 167
                      69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.44E-31118174No hitNo description
SMARTSM003804.8E-34118181IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-21118175IPR016177DNA-binding domain
PROSITE profilePS5103223.13118175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-30118175IPR001471AP2/ERF domain
PRINTSPR003674.2E-11119130IPR001471AP2/ERF domain
PfamPF008472.3E-11119167IPR001471AP2/ERF domain
PRINTSPR003674.2E-11141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MCGGAILLSL KKPAGSRRLA ERSPCPEKKP RRGGGGRRYF AGFPEEDDED FEADFEEFEG  60
DSGDSDLEFG EEEEEDDVVE IKPPAVKRAF SRDGLSTMTT AGFDGPAARS AKRKRKNQYR  120
GIRQRPWGKW AAEIRDPRKG VRVWLGTFNS AEEAARAYDA EARRIRGKKA KVNFLEAPTV  180
AQKRRAGLTV AETPKSSVEQ KPTVKPALNN LASTNAFVYP SADFTSNNPF AQPDNTPFVP  240
AMNSAAPIGD PIMNQYSDQG SNSFGCSDLG WENDTKTPDI TSIAPISTIA EGDESAFVKS  300
NTHSSVVPPV MENNTVDLTD GLTDLEPYMR FLLDGEVGES IDSLPNLGGS QDVDSNMDLW  360
SFDDMPISGD FY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18118174562ATERF1
3gcc_A1e-18118174562ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003506G0180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0993430.0FP099343.1 Phyllostachys edulis cDNA clone: bphyem203f10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816350.10.0ethylene-responsive transcription factor 1
SwissprotQ6K7E61e-177ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A1E5WBP20.0A0A1E5WBP2_9POAL; Ethylene-responsive transcription factor 1
STRINGOPUNC02G32270.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.23e-35related to AP2 2
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]