PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003558G0150
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 107aa    MW: 11039.4 Da    PI: 5.5617
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003558G0150genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY41.82.1e-1363972659
                     EE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY 26 rCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                     rC++a gCp++k+ver+++dp ++++tYeg+H+h 
  PH01003558G0150 63 RCSTAkGCPARKHVERATDDPAMLVVTYEGDHRHA 97
                     9*9988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081115.5715499IPR003657WRKY domain
PfamPF031065.2E-116396IPR003657WRKY domain
SuperFamilySSF1182906.28E-106397IPR003657WRKY domain
SMARTSM007749.7E-76398IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-126397IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MAVDLMGCGY VPRGLAAAEE EQLAFQEAAA AGLRSLELLV SSLSPRADRP PPFGEIAEQA  60
VSRCSTAKGC PARKHVERAT DDPAMLVVTY EGDHRHAPAA GSGHAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003558G0150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9720241e-39EU972024.1 Zea mays clone 373577 WRKY25 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174298.16e-19probable WRKY transcription factor 17
RefseqXP_020200493.16e-19probable WRKY transcription factor 17
TrEMBLA0A3B6MK191e-17A0A3B6MK19_WHEAT; Uncharacterized protein
TrEMBLA0A3B6MX221e-17A0A3B6MX22_WHEAT; Uncharacterized protein
TrEMBLA0A453JS781e-17A0A453JS78_AEGTS; Uncharacterized protein
TrEMBLA0A453LPM92e-17A0A453LPM9_AEGTS; Uncharacterized protein
STRINGTraes_5BL_8688F70C9.14e-17(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.23e-15WRKY DNA-binding protein 11