PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003628G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Dof
Protein Properties Length: 246aa    MW: 25693 Da    PI: 8.8627
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003628G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof102.42.7e-3259106350
           zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvP 50 
                      ++ l+cprC+s+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnv 
  PH01003628G0010  59 QAPLRCPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVL 106
                      67799*****************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027016.0E-2861107IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-2162105IPR003851Zinc finger, Dof-type
PROSITE profilePS5088424.68962116IPR003851Zinc finger, Dof-type
PROSITE patternPS01361064100IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDHLKGASSA VNPASLPLVL QPIVSNPSPT SSSSTSSRSS AQPQQRSSSA TSLPQGAEQA  60
PLRCPRCNSS NTKFCYYNNY NLTQPRHFCK TCRRYWTKGG ALRNVLPGTV PSLWPQAAPR  120
PIPPPSHMDS QLGMGALGHH DVLSGLGIKP PSSPAASYYS DQLHAVVSSL GRPQAYVAPA  180
SLPCTTAVTS LPAAVSSVSS APSSNTVGLE MPPVSLGAPE MQYWSCPEAM SVAWPDLPTP  240
NGAFP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003628G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0990431e-75AC099043.6 Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence.
GenBankAK0633801e-75AK063380.1 Oryza sativa Japonica Group cDNA clone:001-114-F11, full insert sequence.
GenBankAP0149591e-75AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-75CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651845.12e-56PREDICTED: uncharacterized protein LOC102700699
TrEMBLA0A0E0KJE52e-51A0A0E0KJE5_ORYPU; Uncharacterized protein
STRINGOPUNC03G32270.13e-52(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77103144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.13e-27DOF zinc finger protein 1