PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003717G0190
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 249aa    MW: 27957.6 Da    PI: 4.2543
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003717G0190genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.49.3e-0753851955
                     HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     af+ Lr+l+P++    ++K + a+ L +++eY+k Lq
  PH01003717G0190 53 AFQILRDLIPHS----DQKRDRATFLLEVIEYVKFLQ 85
                     79*********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.26E-55387No hitNo description
SuperFamilySSF474595.37E-75389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-95488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVTMRLWIHG LDRPSTVFFL SLSLCSVFQR NETEERIEIE IEGFWFGCFT PIAFQILRDL  60
IPHSDQKRDR ATFLLEVIEY VKFLQEKSSN RVSDDGMPDA APSTKNDSAT GLTFSGKFLD  120
DSIPAAPEML QNAQTVVESA ELNADSIELQ SQSQWQQLPC PTDCPDSNEV SNEHDELAID  180
EGTISVSSMY SQNSPSLSEL SLIATLVRLE LLKRNEGITM VYGSYNFSCK RFLNFFLLVH  240
LFPLPLVG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003717G0190
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178052.12e-53transcription factor BIM2-like
TrEMBLA0A446YLD01e-52A0A446YLD0_TRITD; Uncharacterized protein
TrEMBLA0A446YLG41e-52A0A446YLG4_TRITD; Uncharacterized protein
STRINGTraes_7DL_04FC0BF21.28e-53(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.17e-21BES1-interacting Myc-like protein 2