PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003751G0200
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 258aa    MW: 27989.9 Da    PI: 10.3382
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003751G0200genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.61.2e-1266107543
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNk 43 
                      k  rr+++NReAAr+sR+RKka+i++Le    + ++Le e +
  PH01003751G0200  66 KTLRRLAQNREAARKSRLRKKAYIQQLESgrmRLAQLEHEAQ 107
                      7789***********************964446777777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-1061113No hitNo description
SMARTSM003382.5E-862127IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.58864101IPR004827Basic-leucine zipper domain
PfamPF001707.2E-1066108IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-866113No hitNo description
PROSITE patternPS0003606984IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MTSSAPHAAG SSRRSPPSKA AGGPLAIGKG SKAAFKREGS STGKRSSTAA TASSSELEGP  60
KTPDPKTLRR LAQNREAARK SRLRKKAYIQ QLESGRMRLA QLEHEAQMTR AQIVLRHVEP  120
LTEQQLVGVC GVQQSAKREE DALDGELEAL LRSLSEVVSS SDALQPPPMV YYHPADMAGY  180
MGHYVSLAMD KLASLETFLR QADELRLQTL HTLPQILTVR QSARCFVAID EYFGRLRALS  240
TLWTTSRPPA VARDPAG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003751G0200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1199092e-50AK119909.1 Oryza sativa Japonica Group cDNA clone:002-183-A10, full insert sequence.
GenBankCT8331052e-50CT833105.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA207O13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438679.11e-55transcription factor TGAL8 isoform X1
RefseqXP_021304565.19e-56transcription factor TGAL8 isoform X2
SwissprotQ69T219e-44TGAL8_ORYSJ; Transcription factor TGAL8
TrEMBLM8AM874e-61M8AM87_TRIUA; TGACG-sequence-specific DNA-binding protein TGA-2.1
STRINGTRIUR3_24613-P16e-62(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129722126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.12e-27bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]